Protein

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Genbank accession
YP_006489235.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MLNVNTKSGVKGVYSYKVTRENGDIVEGNSKNMILDNILKVTQQYGLYYSMSCYYLEVGSGTTPVTSADTGIETSLATHTGYKTGTYTERLEGLTRFRKLTATWVLPIGNIVGTVTELCAKSGHGHPVSRVLLTDISGNPTSLTLTATDQLTVVYELEVEIPNFDSSVTLNLYGVDTVCRLVSVNALSETSKHGVDNYKIYATYNRAFHEPVTITDAGEVFLHADYPNNTYAKGVITAGAYQNTAQQSVKNKIVYAPEDANGNIYAIGFYVDSARIRQVLTFDPPLPKTSADKVTIEMVVSSTMVSI
Physico‐chemical
properties
protein length:307 AA
molecular weight: 33465,35370 Da
isoelectric point:5,69933
aromaticity:0,08795
hydropathy:-0,11205

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006489235.1
1 307
Domain Start End Length (AA) Confidence
N-terminal 1 208 208 0,1901
Central domain 209 296 89 0,0595
C-terminal 297 307 10 0,5626
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-208
Central
209-296
C-terminal
297-307

Taxonomy

  Name Taxonomy ID Lineage
Phage Colwellia phage 9A
[NCBI] 		765765 Uroviricota > Caudoviricetes > Franklinbayvirus >
Host Colwellia
[NCBI] 		28228 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Colwelliaceae >
Host Colwellia psychrerythraea 34H
[NCBI] 		167879 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Colwelliaceae > Colwellia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006489235.1 [NCBI]
Genbank nucleotide accession
NC_018088.1 [NCBI]
CDS location
range 30763 -> 31686
strand -
CDS
ATGCTAAATGTAAATACAAAGTCAGGTGTTAAGGGTGTATATAGTTATAAAGTAACTAGGGAGAATGGTGATATTGTAGAAGGTAATTCTAAGAATATGATACTTGATAACATCTTAAAAGTTACACAGCAATATGGGTTATATTACTCTATGTCATGCTATTACCTTGAGGTAGGTTCAGGAACTACACCAGTAACCTCTGCAGATACAGGTATAGAAACCTCACTTGCAACGCATACGGGATATAAAACTGGTACGTATACAGAAAGGTTAGAAGGGCTTACTAGGTTTAGAAAATTGACTGCAACTTGGGTTTTACCTATTGGGAATATTGTAGGCACTGTTACTGAACTTTGTGCAAAAAGTGGACACGGACACCCAGTATCAAGGGTATTGCTTACAGATATATCAGGTAACCCAACTTCACTTACATTGACAGCTACCGATCAATTGACTGTTGTTTATGAACTTGAAGTTGAAATACCTAACTTTGACTCGTCTGTAACACTAAACCTTTATGGTGTAGATACAGTGTGCAGACTAGTTTCTGTAAATGCACTTTCAGAAACATCAAAACATGGTGTAGATAATTATAAGATATATGCTACATATAATCGTGCATTCCATGAACCTGTAACCATAACTGATGCAGGTGAAGTATTTTTACATGCAGACTACCCAAATAATACTTATGCAAAAGGTGTGATAACAGCAGGTGCTTATCAAAATACTGCACAACAGTCTGTTAAGAATAAGATTGTATACGCCCCTGAAGATGCTAATGGTAATATTTATGCGATAGGCTTTTATGTAGATTCTGCAAGGATTAGACAAGTACTCACTTTTGATCCACCATTACCAAAAACCTCTGCTGATAAGGTTACAATCGAGATGGTAGTATCTTCAACTATGGTTAGCATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2031c19164c388ebfee6d481556485eb36465c2f8995be4ecf350fdde8c2872f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7610
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Collwellia phage 9A Henn,M.R., Deming,J., Carpenter,S., Colangelo-Lillis,J., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank