Protein

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Genbank accession
QGZ18024.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MASTYLSKTFSSADSSGNGQKKFTVSAWVKRASTGSHQDIVSAYKAANGFQCDAIRIYDTDLFGAFSHSDSGGSGFNVRSNAKLRDTNAWYHLVTAVDTTQSTASDRVKLYINGEQVTSLSANTYPAQNESLIFGMPTDAVHEIGAVGTSAYFDGVMSHVHICFNQQYAASDFGETDSTTGEWKIKTSPSVSYGDLGGWYLKDAANGTDYSSNSNTYAVNGTLTKTEDNPSNVFATINPLSGYHGDKAILEYGNNQLKSSTGGGAQWYGASTLAFTKGKFYCEVKNITTSNASLAVGISMNPARNQYENHSAGRRGTDIATENYSGNIVIANSNVAVGYMPTWSGSGDICMLAVDADNNKFYIGKNGTWADSDNPSNGTGGYDMSSVANHSESTGFYHFSFGSTSSSYMNSFSVNFGNGYFGTTAVSSAGTNASGIGIFEYDVPTGYTALSTKGLNE
Physico‐chemical
properties
protein length:457 AA
molecular weight: 48508,06340 Da
isoelectric point:5,24740
aromaticity:0,11816
hydropathy:-0,39759

Domains

Domains [InterPro]
G3DSA:2.60.120.200
STR
2–172
G3DSA:2.60.120.200 DC_1713
IPR013320
STR
11–162
IPR013320
PF13385
LEC
18–162
PF13385
QGZ18024.1
1 457
Architecture
STR
STR
STR 2-172 | STR 185-457
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ18024.1
1 457
Domain Start End Length (AA) Confidence
N-terminal 1 233 233 0,0004
Central domain 234 432 200 0,3910
C-terminal 433 457 24 0,7389
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-233
Central
234-432
C-terminal
433-457

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC104P
[NCBI] 		2686459 No lineage information
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18024.1 [NCBI]
Genbank nucleotide accession
MN698243 [NCBI]
CDS location
range 37342 -> 38715
strand -
CDS
ATGGCTAGTACATATTTATCAAAAACTTTTAGTAGTGCAGATAGCTCTGGAAATGGACAAAAAAAATTTACTGTTTCAGCATGGGTAAAAAGAGCAAGTACAGGAAGTCATCAAGATATTGTTTCTGCTTACAAAGCAGCTAATGGTTTTCAATGTGATGCTATAAGAATTTATGATACAGATTTATTTGGTGCTTTTTCTCATTCAGATAGTGGTGGAAGTGGATTTAATGTTCGTTCTAATGCAAAATTACGAGATACAAATGCTTGGTATCATTTAGTTACTGCTGTTGATACAACACAAAGTACAGCTTCTGATAGAGTAAAACTTTATATAAATGGCGAACAAGTTACATCTTTATCTGCAAATACTTATCCTGCACAAAATGAAAGTCTAATATTTGGTATGCCTACAGATGCAGTACATGAAATAGGTGCAGTAGGAACTTCAGCATATTTTGATGGAGTAATGTCTCATGTTCATATTTGTTTTAATCAACAATATGCTGCATCAGATTTTGGAGAAACAGATAGCACAACTGGAGAATGGAAAATTAAAACTTCTCCAAGTGTATCTTATGGAGATTTAGGTGGTTGGTATTTAAAAGACGCAGCTAATGGAACTGATTATTCTAGTAACTCTAATACTTATGCAGTTAATGGTACACTTACAAAAACAGAAGATAATCCAAGTAATGTTTTTGCTACAATAAATCCTCTTTCAGGATATCATGGAGATAAAGCTATTTTGGAATATGGTAATAATCAACTTAAAAGTAGCACAGGTGGTGGTGCTCAATGGTATGGTGCTAGTACTTTAGCTTTTACTAAAGGTAAATTTTATTGTGAAGTTAAAAATATAACTACTTCTAATGCAAGTTTAGCAGTGGGTATTTCAATGAACCCAGCAAGAAATCAATATGAAAATCATTCAGCAGGAAGAAGAGGAACAGATATAGCTACAGAAAATTATAGTGGAAATATTGTAATTGCTAATTCAAATGTTGCTGTAGGATACATGCCTACTTGGTCAGGAAGTGGAGATATTTGTATGTTAGCAGTAGATGCAGATAACAATAAATTTTATATAGGTAAGAATGGAACTTGGGCAGATAGTGATAATCCATCAAATGGCACTGGTGGTTATGATATGTCATCAGTTGCAAATCATTCTGAAAGTACAGGTTTTTATCATTTTTCATTTGGTTCAACAAGTAGTTCATATATGAATTCATTTTCAGTTAATTTCGGCAATGGTTACTTCGGAACAACAGCAGTATCTAGTGCAGGAACTAACGCAAGTGGAATAGGAATATTTGAATATGATGTTCCAACAGGATATACTGCTTTATCAACAAAAGGATTAAACGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ce80eb8d4323ad20bb5035269f94af73e76a14818d618be58e14e2875233645a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7945
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank