Protein

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Genbank accession
USL89842.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MADVLEGLPPKHYHGQNQVWYENGKQYIAVNVGEDDDPVYQYREVLYRWIGNNNRWYLAYSNNPDSVGTVSLDNARYFTGAPYRGDVALFGDGLKELPDPLPFFTGSQYKLYSNGADTLENYVNFGYVGNSNPYGIDNIYRMCKLRQTEGQYLYTVTRPGQEGYNWGVGAFVGTIPTAIYPNIWSLQFRLGDFVDGQDRMWLLYGGSNVTWTEQGTGQQKSAQISFGAHVSRSGELMYYRRFNSTYVYARVQLASLTGWHQVQLTQDANHNCTITVDKGTPNEQSASCSLKLWGKQFDSVLFNCGPECVGTTGVPITDVYDKSWIGNIDIRRFYIDTHGTFNENVIPRYYEQPYLNIEIQAEGSSTWQDVSSSLVNWPHEQDNRRCIYTLPDVPDGQYFIRYKTNYGVSNTLPVRIKGDISRKTELYSDFSDLIEMRDNWLVAHKQWGGTGVVGNQTALLNGGVVRENVEVYPDYTDVANAVKGVLRLRGHGTYYDGDVIGVDRIGHPAPDGRKTEVGSALVTREYLGPGSFRCKLRSPYRKGAATALWTFHYEEIYENDPRWQSFLDEGLHAQGNEDDGYYIVRNHEIDIEYPTALKDAVDMEDVSADKARLNTWEGELRTWDLDENDPNYFSEYTDFFEQWVDEALSDGKWHEIRFDWHTGEQNPPAGLPAKRVDFYVDGELKWTNTTHIPDIPGRLWIALWYPRAPGNRWAGHSADYIYDSIDVDYFHYIPFPDEPVRQLGETYPADVWRDWKWENFFSGFYNELPPPYELPKPYDDDMPKDADGTWLPTSYLAAGKNPPQYITPYRLEWRNDRKLQGSGNGEFQFLNLVQGARYKMTIKVARTSTQAAGLQLVTFEPGNDVIDIPMFEGDTYELTFIAQGQQRVSLRRNTTNNKYEGLTDIRLERI
Physico‐chemical
properties
protein length:910 AA
molecular weight: 104462,37650 Da
isoelectric point:4,90131
aromaticity:0,14066
hydropathy:-0,64484

Domains

Domains [InterPro]
DC_0211
ATT
1–428
DC_0211 IPR000757
cd00413
ENZ
429–732
cd00413 DC_0213
G3DSA:2.60.120.200
STR
461–733
G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
461–735
G3DSA:2.60.120.200
IPR013320
STR
518–727
IPR013320
USL89842.1
1 910
Architecture
ATT
ENZ
STR
RBD
ATT 1-428 | ENZ 429-460 | STR 461-735 | RBD 736-910
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
USL89842.1
1 910
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,7471
Central domain 11 209 200 0,9017
C-terminal 210 910 700 0,2046
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-910

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaP_M9
[NCBI] 		2950472 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USL89842.1 [NCBI]
Genbank nucleotide accession
ON457555 [NCBI]
CDS location
range 34696 -> 37428
strand +
CDS
ATGGCTGATGTACTAGAGGGTTTACCTCCTAAGCATTACCACGGTCAGAATCAGGTTTGGTACGAAAATGGCAAACAGTATATTGCGGTGAACGTCGGTGAAGATGATGACCCAGTGTACCAGTACCGCGAAGTGCTTTACCGCTGGATTGGTAACAACAACCGCTGGTACTTAGCCTATAGCAACAATCCTGACTCTGTAGGCACAGTAAGCCTTGACAACGCACGTTATTTCACAGGTGCTCCGTACCGTGGTGACGTAGCCTTGTTTGGTGACGGTCTGAAAGAGCTACCAGACCCACTCCCGTTCTTCACAGGCTCACAGTACAAACTTTACAGTAACGGTGCTGACACATTAGAGAACTACGTTAACTTCGGTTATGTAGGTAACTCTAACCCTTATGGTATTGACAACATTTACCGTATGTGTAAGTTACGTCAAACAGAGGGTCAGTACCTTTACACAGTTACGCGTCCCGGTCAAGAGGGCTATAACTGGGGTGTAGGTGCATTCGTGGGTACAATCCCGACTGCAATCTACCCGAACATTTGGTCACTACAATTCCGACTGGGTGACTTCGTAGATGGACAAGACCGCATGTGGCTGCTGTATGGCGGCTCTAATGTGACTTGGACAGAACAGGGCACTGGTCAACAAAAGAGTGCTCAGATTAGCTTTGGTGCGCATGTGTCGCGTTCTGGTGAGTTGATGTACTACCGTCGATTCAACAGTACTTACGTGTACGCACGTGTGCAATTAGCAAGTCTGACTGGTTGGCATCAAGTGCAACTAACGCAGGACGCGAACCACAACTGCACGATTACAGTTGATAAAGGTACGCCGAATGAACAGTCAGCTTCGTGCTCATTGAAGCTTTGGGGTAAACAGTTTGACAGTGTATTATTCAACTGTGGCCCTGAGTGTGTGGGCACGACTGGCGTCCCTATTACAGATGTCTACGACAAGTCGTGGATTGGTAACATCGACATCCGTCGTTTCTACATCGACACACACGGTACATTCAATGAGAACGTGATTCCTCGCTACTATGAGCAACCTTACTTGAACATCGAGATTCAGGCTGAGGGTTCAAGTACATGGCAAGACGTTTCAAGCTCGTTGGTGAACTGGCCTCACGAGCAGGATAACCGCCGTTGTATCTACACGTTGCCGGATGTGCCTGATGGTCAGTACTTTATCCGGTACAAGACCAACTACGGTGTGAGCAACACACTTCCTGTGCGTATCAAGGGCGATATTAGCCGCAAGACTGAGCTGTACTCTGACTTCTCTGACTTGATTGAGATGCGTGATAACTGGCTCGTTGCACATAAGCAATGGGGTGGTACAGGCGTTGTGGGCAACCAGACTGCGCTGCTGAACGGTGGTGTGGTGCGTGAGAACGTTGAGGTATATCCTGACTACACCGATGTGGCAAACGCTGTTAAAGGCGTCCTACGTTTGCGTGGGCATGGCACTTACTACGACGGTGACGTTATTGGTGTTGACCGTATCGGACACCCTGCACCTGATGGTCGTAAGACTGAGGTGGGTTCCGCTCTGGTTACACGTGAGTACTTGGGGCCGGGTAGTTTCCGCTGTAAATTGCGCTCCCCTTACCGGAAAGGTGCAGCTACGGCTTTGTGGACATTCCACTACGAGGAAATCTACGAGAATGACCCACGTTGGCAGAGCTTCTTGGACGAGGGCTTACACGCCCAAGGTAATGAGGACGATGGTTACTACATTGTACGTAACCACGAGATTGACATCGAGTACCCAACAGCATTGAAAGATGCAGTGGATATGGAGGATGTCTCGGCTGATAAAGCGCGTCTGAACACTTGGGAGGGTGAGTTACGTACTTGGGACTTGGATGAGAATGACCCGAACTATTTCTCTGAATACACTGACTTCTTTGAGCAGTGGGTGGATGAGGCATTAAGTGATGGTAAGTGGCACGAGATTCGTTTCGATTGGCACACCGGAGAACAGAACCCACCAGCAGGGCTTCCTGCTAAGCGTGTGGATTTCTACGTTGACGGTGAGTTGAAATGGACTAACACCACACACATCCCAGATATTCCGGGTCGTCTATGGATTGCTCTATGGTATCCACGCGCACCGGGCAACCGATGGGCTGGACACAGTGCCGACTACATCTATGATTCGATTGACGTTGACTACTTCCATTACATCCCGTTCCCAGATGAACCAGTGCGCCAGTTAGGTGAAACATATCCTGCTGACGTATGGCGAGACTGGAAGTGGGAGAACTTCTTCTCCGGTTTCTATAACGAGCTACCACCACCATATGAGCTACCTAAGCCGTATGATGATGATATGCCTAAAGACGCTGATGGTACATGGTTGCCAACGTCCTATTTAGCCGCTGGTAAGAACCCACCGCAGTACATCACACCGTACCGATTGGAGTGGCGTAATGACCGTAAATTGCAAGGCTCAGGTAATGGTGAATTCCAGTTCTTGAACCTAGTGCAAGGTGCACGTTACAAGATGACAATCAAGGTGGCACGTACTTCGACACAAGCCGCTGGTTTACAGTTGGTGACGTTCGAGCCGGGTAATGATGTAATTGACATCCCAATGTTTGAGGGTGACACATACGAGTTGACTTTCATTGCGCAAGGTCAGCAACGTGTGTCCCTACGTCGTAACACAACTAACAATAAATACGAGGGTCTGACTGATATTCGGTTAGAGCGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ac5a636c728888dc204b2f023c2a556b2333f11278177ae73269963f66c98910
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2933
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50