Protein

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UniProt accession
A0A8S5LGH5 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TSP
Evidence RBPdetect
Probability 0,54
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MIELSVSLASNGAVKLAGYEQMLRFGYTKNRGVYQLRIDAAGEWKGLAVRCFWHVPDGKDPPSSLVVDGYVNVPANVTAQPGSGCITFEGSDGTKTVTSADLRYRVAANSGTEDGTEPEPGTPAWQQLVDAVKESAASAEQSKTEALDAAERAGASAKKAGQALSDTITAKEDALKAIGDKQTTATQAVDTARDKALQQVEASTEAAQTAASEAAASAGNADQSAQEAADSLQELKDGIANGNFKGEKGDKGDTGPIGPVGPQGERGPQGPTGATGATGPQGEKGDTGPQGPKGETGPAVALDTTLTHGGEAADAKATGDAISAVKARQNILVGTETGNPIAVDDAFSAPLCGLTVYGKSTQVRTTGAQLISLNDSYGVVTVNGVTKTPIGISAWKLEGISKEDAIIYPYSSLTFLGLSKGDYVFSVFGTSKAKARYTIIGKGSSGYIQTGHSQKISIQEDVKLTFNYKIENGVESNGILMIMLNSGSTSLPWEPYTRGEPSPSPDYPQEIESAGDGGSVVVTLSDGNGKTQTLTLPTPNGLPGIPVTSGGNYTDPQGQQWVCDEVDLKRGVKVQRANAVDLSTCRVTAITKLTVVKRLSIRLLLYGRDYKTEALCNKLPFIVSFDKDVPHFYVDKTNVQIFIPLDAKPPEEGEYILFYALATPIETPLTPDEIAAYKALVAYGPDTVVRASDGAGIKLDYQRDVNIAIKKLEDAIASMT
Physico‐chemical
properties
protein length:720 AA
molecular weight: 75362,26710 Da
isoelectric point:4,90062
aromaticity:0,06111
hydropathy:-0,30458

Domains

Domains [InterPro]
DC_0431
STR
35–635
DC_0431
IPR050392
Unmapped
81–349
IPR050392
IPR008160
STR
245–298
IPR008160
A0A8S5LGH5
1 720
Architecture
STR
STR 35-635 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5LGH5
1 720
Domain Start End Length (AA) Confidence
N-terminal 1 384 384 0,9730
Central domain 385 598 215 0,1997
C-terminal 599 720 121 0,2618
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-384
Central
385-598
C-terminal
599-720

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctDo63
[NCBI] 		2823571 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD68991.1 [NCBI]
Genbank nucleotide accession
BK014713 [NCBI]
CDS location
range 2358 -> 4520
strand -
CDS
ATGATCGAACTTAGCGTATCTCTTGCCTCCAACGGTGCTGTAAAGCTGGCAGGCTATGAGCAGATGCTGCGCTTCGGCTACACCAAGAACCGGGGCGTGTACCAGCTGCGCATCGATGCCGCTGGCGAGTGGAAGGGGCTGGCCGTACGCTGCTTCTGGCACGTCCCGGACGGCAAAGACCCGCCCTCCTCGCTGGTGGTGGACGGCTATGTAAATGTGCCTGCCAACGTGACCGCACAGCCGGGCAGCGGCTGTATCACCTTTGAGGGCAGCGACGGCACCAAGACCGTGACCAGCGCCGACCTTCGCTACCGGGTGGCCGCAAACTCCGGCACGGAGGACGGCACAGAACCGGAACCGGGAACACCTGCATGGCAGCAGCTGGTGGATGCCGTGAAGGAATCGGCAGCATCGGCAGAGCAATCCAAAACGGAAGCGCTGGACGCGGCAGAGCGGGCCGGGGCATCTGCCAAAAAGGCCGGGCAGGCTCTCTCTGACACCATCACCGCCAAAGAGGACGCACTGAAAGCCATCGGTGACAAGCAGACTACCGCCACGCAGGCTGTGGATACGGCCCGGGACAAGGCTCTACAGCAGGTGGAAGCCTCTACAGAAGCCGCCCAGACCGCTGCCAGTGAAGCCGCCGCCAGTGCGGGCAATGCAGACCAGAGCGCTCAAGAAGCCGCTGACAGCTTGCAGGAGCTGAAGGACGGCATTGCAAACGGAAACTTCAAAGGCGAGAAGGGTGACAAGGGCGACACTGGCCCCATCGGTCCGGTCGGTCCGCAGGGTGAGCGTGGCCCTCAAGGCCCCACAGGCGCTACCGGAGCCACTGGCCCACAGGGCGAAAAAGGTGATACCGGCCCGCAAGGCCCTAAAGGCGAGACCGGCCCTGCCGTAGCACTGGACACCACCCTCACCCACGGGGGCGAAGCCGCTGACGCAAAAGCCACAGGCGACGCGATCAGCGCAGTCAAGGCCCGGCAGAACATCCTTGTGGGCACTGAGACAGGCAATCCTATCGCCGTTGACGATGCGTTCTCTGCGCCCCTGTGCGGCCTGACCGTATACGGCAAATCAACGCAGGTGCGCACGACTGGGGCGCAGTTAATATCATTAAACGATTCTTATGGAGTAGTAACAGTAAACGGAGTAACAAAAACCCCAATTGGAATTTCGGCATGGAAACTAGAAGGAATCTCCAAAGAGGATGCAATAATTTATCCTTATTCTTCGTTGACTTTTCTTGGCCTATCTAAAGGAGATTATGTATTTTCTGTATTTGGTACTTCAAAAGCAAAAGCAAGATATACAATTATTGGGAAAGGATCATCGGGATATATTCAAACTGGACACAGCCAGAAAATATCAATACAAGAGGACGTAAAACTAACTTTCAATTATAAGATTGAAAATGGAGTAGAATCGAATGGAATTTTAATGATTATGCTGAACTCCGGCTCCACTTCTCTCCCTTGGGAGCCCTACACCAGAGGCGAGCCATCTCCATCACCGGATTACCCACAGGAGATTGAGAGTGCAGGGGATGGTGGGAGTGTGGTGGTGACCCTGAGCGATGGGAACGGAAAAACGCAAACTCTCACGTTGCCCACTCCCAACGGCTTACCCGGCATCCCTGTCACCTCTGGCGGCAACTACACTGACCCGCAGGGCCAGCAGTGGGTGTGCGACGAGGTGGACTTGAAGAGAGGGGTGAAGGTGCAGAGGGCGAACGCTGTAGACTTGTCAACCTGTAGAGTTACGGCTATCACTAAGCTTACGGTAGTAAAACGACTTTCGATTCGGTTGCTGCTCTATGGTCGCGATTATAAAACAGAAGCCCTATGCAATAAATTGCCATTTATTGTTTCGTTTGATAAAGATGTCCCACACTTTTATGTAGACAAAACCAATGTGCAGATTTTTATTCCCCTTGACGCCAAACCCCCGGAAGAAGGAGAATACATTTTATTCTACGCTCTCGCCACCCCCATCGAAACCCCGCTCACCCCTGACGAAATTGCCGCCTACAAAGCCCTCGTCGCTTACGGCCCTGACACGGTGGTGCGGGCGAGTGACGGTGCGGGCATCAAGTTGGACTACCAGCGGGACGTGAACATTGCAATTAAAAAGTTGGAGGACGCAATCGCGTCCATGACCTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0005576 extracellular region Cellular Component IEA:UniProtKB-SubCell (UniProt)

Tertiary structure

PDB ID
3233af35eab00e4542afdae961aa3ce7e79000bbe8494347b35df1db28c10ef0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8439
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50