Protein

View in Explore
Genbank accession
QXN60142.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
Protein sequence
MAAGDKLIINFANRDTMKYNPSVDYGAGSIVVYTDGNFYEANAKIDANTTWALGTTGATWKQIAKGFPVGWVQSSKYLAGDKVIKDKSVWEANADIPANTAFSKGTAGATWKIVVAGNTPAYSSSSVYSVGDRVHINGHEWECTTAITTGETFNPAKWNVVAGLLDGQAFNALNTLTATSGDLLAGDYLLPATTDNLNIGNLTYALASIYSQRYRFVVDGNYMGEIDADSGNLEINSSQKMQFKPSGATSTVFEMSSATARLNADFVIDNNHKLTFRDSDASSKEYWDMEMTGNDWKLTYNGTSTIGLLFDRLSSDTSKGIFQPIADNNNYLGSSGKKWIRVYATDGSINTSDKRLKDIHNDTIPVKLLESWAKYCKPAEWSWKEGNGTAGRKFGWLAQDVLKALKEAGLDWNDYSLIEKCEKGYYHICKDECQAVENAMIRYKLGL
Physico‐chemical
properties
protein length:447 AA
molecular weight: 49092,24070 Da
isoelectric point:5,41968
aromaticity:0,11186
hydropathy:-0,37987

Domains

Domains [InterPro]
DC_1986
ATT
20–70
DC_1986 G3DSA:2.10.10.90 IPR036388
DC_0783
STR
72–435
DC_0783
IPR003610
CBM
121–155
IPR003610 IPR030392
IPR030392
CHP
352–410
IPR030392
QXN60142.1
1 447
Architecture
ATT
STR
RBD
ATT 20-70 | STR 71-435 | RBD 436-447
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXN60142.1
1 447
Domain Start End Length (AA) Confidence
N-terminal 1 168 168 0,1273
Central domain 169 367 200 0,1357
C-terminal 368 447 79 0,9984
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-168
Central
169-367
C-terminal
368-447

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage HNL01
[NCBI] 		2853169 No lineage information
Host Aliivibrio fischeri ES114
[NCBI] 		312309 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Aliivibrio > Aliivibrio fischeri

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXN60142.1 [NCBI]
Genbank nucleotide accession
MZ456352.1 [NCBI]
CDS location
range 54384 -> 55727
strand -
CDS
ATGGCAGCAGGGGATAAACTAATTATCAACTTTGCTAACCGCGATACGATGAAATACAACCCCAGCGTCGATTATGGTGCTGGGAGTATTGTAGTCTATACAGACGGTAATTTCTATGAAGCAAATGCAAAAATTGATGCAAATACTACTTGGGCTTTAGGTACTACTGGTGCTACTTGGAAACAGATTGCTAAGGGTTTTCCAGTAGGGTGGGTGCAATCTTCTAAGTACTTAGCTGGGGATAAAGTTATCAAGGATAAATCTGTATGGGAAGCTAATGCGGATATCCCTGCTAACACCGCTTTCTCTAAAGGTACCGCAGGTGCTACGTGGAAGATAGTGGTAGCAGGTAATACACCTGCTTACTCTAGCTCTTCGGTATATAGTGTAGGTGACAGAGTACACATCAATGGTCATGAATGGGAATGTACTACTGCAATTACTACAGGTGAAACATTTAATCCTGCTAAATGGAATGTTGTTGCAGGACTTTTAGATGGACAAGCTTTTAATGCACTTAATACCTTAACTGCAACTTCAGGAGATCTTCTAGCAGGTGATTACCTACTACCTGCAACAACGGACAACCTTAATATAGGTAACCTTACATATGCATTAGCTTCTATATACTCTCAACGTTATAGATTTGTAGTTGATGGCAACTATATGGGAGAAATAGATGCAGATAGTGGTAACCTAGAGATTAACTCTAGTCAAAAAATGCAATTCAAACCTAGTGGCGCTACTTCTACAGTTTTTGAAATGTCAAGTGCAACCGCTAGATTGAATGCAGATTTTGTAATAGATAATAACCACAAATTAACTTTCCGTGACTCTGATGCTTCTAGTAAAGAGTATTGGGATATGGAGATGACAGGTAATGATTGGAAACTTACTTACAATGGTACCTCTACGATAGGGTTACTTTTTGACAGACTAAGCAGTGATACCTCTAAAGGTATTTTCCAACCTATTGCAGATAATAACAATTATTTAGGCTCTTCTGGTAAAAAATGGATTCGTGTTTACGCTACCGATGGTAGTATCAATACTTCCGATAAAAGGTTAAAGGATATCCATAATGATACGATCCCTGTGAAACTTTTAGAGTCTTGGGCAAAATATTGCAAACCTGCTGAATGGAGTTGGAAAGAGGGTAATGGTACGGCTGGTCGTAAATTTGGATGGTTAGCTCAGGATGTTCTTAAGGCACTAAAGGAAGCTGGTCTTGATTGGAATGATTACTCCCTTATTGAGAAGTGTGAAAAAGGATATTACCATATTTGTAAAGACGAGTGTCAAGCAGTAGAGAATGCTATGATTCGTTACAAGTTAGGGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d9eb161f7ff7b49afa756ec3cb2cfd91ff418c6bc9f25fbf0fb423a5f56bb4e8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7665
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Independent host- and bacterium-based determinants protect a model symbiosis from phage predation Lynch,J.B., Bennett,B.D., Merrill,B.D., Ruby,E.G. and Hryckowian,A.J. — — GenBank