Protein

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Genbank accession
AFR52425.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDSWNRGGGSKFEDLQTAINEANKYINYSDKSITIKLISDLVINEFINIVNIHSPFLNIDFNDYSIILNKASYSIGFSMYNSILGNINKLKINCNNKRINTAVLLKANSFCRFNDMKGILNCLGNAFTVSFNSEAFIYDSTCELSAGSSGYYSKGILSMGSKLLVNNCKFTQNSGTLSQSVEISGIIDNFNTTFSGSITGKSQVVGTWTKNGYISA
Physico‐chemical
properties
protein length:216 AA
molecular weight: 23736,57940 Da
isoelectric point:8,52480
aromaticity:0,11111
hydropathy:-0,06296

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFR52425.1
1 216
Domain Start End Length (AA) Confidence
N-terminal 1 45 45 0,4655
Central domain 46 205 161 0,9324
C-terminal 206 216 10 0,5782
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-45
Central
46-205
C-terminal
206-216

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CP30A
[NCBI] 		1229752 Uroviricota > Caudoviricetes > Connertonviridae > Fletchervirus CP30A >
Host Campylobacter jejuni subsp. jejuni
[NCBI] 		32022 Bacteria > Proteobacteria > delta/epsilon subdivisions > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae
Host Campylobacter jejuni subsp. jejuni PT14
[NCBI] 		1201032 Bacteria > Proteobacteria > delta/epsilon subdivisions > Epsilonproteobacteria > Campylobacterales > Campylobacteraceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFR52425.1 [NCBI]
Genbank nucleotide accession
JX569801 [NCBI]
CDS location
range 100735 -> 101385
strand -
CDS
ATGGACAGTTGGAACAGGGGGGGGGGCAGCAAGTTCGAAGACTTGCAAACTGCTATTAATGAAGCCAATAAGTATATAAATTATAGTGATAAAAGTATAACTATAAAATTAATTAGTGACTTAGTTATAAATGAATTTATTAATATTGTGAATATACATTCCCCATTTTTAAATATAGATTTTAATGATTATTCTATTATACTAAATAAAGCTTCCTATAGTATTGGATTTTCTATGTATAATTCAATCTTAGGAAATATTAATAAATTAAAAATAAATTGTAATAATAAACGTATCAATACAGCAGTTTTATTAAAAGCTAATTCATTCTGTCGTTTTAACGATATGAAAGGGATATTGAATTGTTTGGGTAACGCATTTACTGTATCTTTTAATTCAGAAGCTTTTATATATGATTCAACTTGTGAATTAAGTGCAGGTAGCAGTGGATACTATTCAAAAGGAATATTATCTATGGGAAGTAAATTGTTAGTTAATAATTGTAAATTTACTCAAAATTCAGGAACGTTAAGCCAAAGTGTTGAAATTTCTGGAATAATAGATAATTTTAATACAACATTTTCAGGAAGCATAACTGGTAAGTCTCAAGTTGTTGGTACTTGGACTAAAAATGGATATATTTCAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
916939a4d00d76ed387febf85d100dde19be38920a36ab4f414d65cbb1b092e5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7460
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Recombination and diversity amongst Campylobacter bacteriophage in chickens Connerton,I.F., Siringan,P. and Cummings,N.J. 2007-03-27 — GenBank