Protein

View in Explore
Genbank accession
AYP28099.1 [GenBank]
Protein name
tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAQSLNQKAVNNFVKGLITEAAELTFPEGASVDELNCDLRRDGTRRRRLGVTTEESFTLSSFTLSDSELTSVGEWANVGGNADLTFLVLQKGSTLYFYNKADLPYSDQIEANSVDLSAYEFSGSSGAETAKCQFTTLEGKLVVSSSAIDTLSIAYDAGSYTVSVIDFQTRDFEWQGEVDEYYTDDSTPSILRQYDARNTGWGASGAPTTLTKRLTHPWYAGKDADNNYSSTEFNKVFGGTSLTGNGHFVLDFFSKNRSAVSGVAGITTETEESRFKCVESFSGRVFYAGLESAKNAGTILFSKLTNNVDDFGKCYQVNDPTAEYLSDLLDTDGGEIHISDAINIQRLYAYQASLFIFAENGVWQITGVDGVFKASSYSVNRVSRIGILSPESFVAAEGVPFWWSRFGIHTLQFDQISGSAQEQNITIPTIQTYWDGISSDAKKAVVSSYDSINKRVYWAYPDDDETVISKLNNFLILDIPLQAFYPWRIENQASSTDCVVGLAFYSGFGAKELQLDVTANNGVDDVVTSAGDDVVSEQISTFNTGDPAIVLLIRDGATDKVTMGSFSSTSFLDWGDTNYSSYAETGYDFVGDLVTKKSAPYVVVYTRLTEEGFTGNEVSGYEVVRPSSLLVSTAWDFNSNFGTSQQAYRLKFPVVVNPSDLTTFNYPESVVTTRLKVRGTGRSMRIRYESEQGKDFILLGWGMIQGRNSRF
Physico‐chemical
properties
protein length:711 AA
molecular weight: 78244,43470 Da
isoelectric point:4,53782
aromaticity:0,12236
hydropathy:-0,24641

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYP28099.1
1 711
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,7165
Central domain 156 354 200 0,4764
C-terminal 355 711 356 0,2166
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-354
C-terminal
355-711

Taxonomy

  Name Taxonomy ID Lineage
Phage Lentibacter phage vB_LenP_ICBM2
[NCBI] 		2847823 Uroviricota > Caudoviricetes > Zobellviridae > Veravirus > Veravirus septentrionalis
Host Lentibacter sp.
[NCBI] 		2024994 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP28099.1 [NCBI]
Genbank nucleotide accession
MF431616 [NCBI]
CDS location
range 24827 -> 26962
strand -
CDS
ATGGCGCAAAGCTTAAATCAGAAGGCAGTAAACAACTTCGTCAAGGGTCTGATAACGGAAGCGGCGGAGCTAACGTTTCCTGAGGGAGCCTCAGTTGACGAGTTGAACTGCGACCTTCGTCGTGATGGCACACGCCGCCGTAGACTTGGTGTCACCACTGAGGAGAGCTTTACGCTTTCCTCTTTTACTCTATCTGACTCAGAGCTTACCTCAGTAGGTGAATGGGCCAACGTTGGTGGTAATGCTGACCTTACCTTTCTTGTCCTTCAGAAAGGCTCAACGCTTTACTTCTACAACAAAGCGGACCTCCCTTACTCAGACCAGATTGAGGCTAACAGTGTAGACCTTTCAGCCTACGAGTTCTCAGGCTCATCAGGTGCTGAGACAGCTAAGTGTCAGTTCACTACACTTGAAGGTAAGCTTGTGGTCTCCTCCTCAGCTATTGACACGCTGTCTATTGCTTACGATGCTGGAAGTTACACAGTTTCTGTCATTGACTTCCAGACCCGTGACTTTGAGTGGCAAGGTGAAGTTGACGAGTACTACACAGACGACAGCACACCTTCAATCCTTCGTCAGTATGACGCAAGGAACACAGGCTGGGGTGCTTCAGGTGCTCCCACTACTCTCACCAAGAGGCTTACGCATCCTTGGTATGCAGGTAAGGATGCAGACAACAACTACAGTTCAACTGAGTTCAATAAAGTCTTCGGTGGTACATCACTTACAGGCAACGGCCACTTCGTACTTGACTTCTTCAGTAAGAACCGTTCAGCAGTCTCAGGCGTAGCAGGTATTACCACAGAGACAGAAGAGTCCCGCTTCAAGTGCGTCGAGTCCTTCTCAGGGCGTGTGTTCTACGCTGGCTTGGAGAGTGCTAAGAACGCAGGCACTATCCTCTTCTCAAAGCTGACCAATAACGTAGATGACTTCGGTAAGTGCTATCAGGTCAATGACCCTACAGCAGAATACCTTTCAGACCTTTTGGATACAGACGGTGGTGAAATCCACATTTCAGACGCCATCAACATCCAAAGGCTTTATGCGTACCAAGCGTCTCTCTTTATCTTCGCTGAGAATGGCGTATGGCAGATCACAGGTGTTGACGGTGTATTCAAGGCGTCATCCTACTCTGTTAACCGTGTGTCACGTATTGGTATCCTTAGCCCTGAAAGTTTTGTGGCAGCTGAGGGTGTCCCTTTCTGGTGGTCACGCTTTGGTATCCACACACTTCAGTTTGACCAAATCTCAGGCTCAGCCCAAGAGCAGAACATTACGATCCCAACAATCCAAACATACTGGGATGGCATCTCTTCAGACGCAAAGAAAGCCGTTGTCTCAAGCTACGACAGTATCAACAAACGTGTATACTGGGCTTACCCTGATGATGACGAAACTGTCATATCAAAGCTCAACAACTTCCTGATCCTAGACATTCCTTTGCAAGCCTTCTACCCTTGGCGCATTGAGAACCAAGCATCAAGTACAGACTGTGTTGTTGGTCTTGCGTTCTACTCAGGCTTTGGAGCTAAGGAACTTCAGCTTGACGTAACGGCAAACAACGGTGTAGACGATGTTGTCACCTCAGCGGGAGACGATGTTGTATCTGAGCAAATCTCTACATTCAACACAGGTGACCCAGCGATTGTCCTTTTGATCCGTGACGGAGCAACAGACAAAGTTACCATGGGTTCCTTCTCAAGCACAAGCTTTCTTGACTGGGGTGACACAAACTACTCATCCTATGCTGAGACAGGATACGACTTCGTAGGTGATCTAGTGACCAAGAAGTCAGCACCATACGTTGTGGTCTACACTCGCTTGACAGAAGAAGGGTTTACTGGTAACGAGGTGTCAGGCTATGAGGTTGTCCGTCCGTCCTCACTGCTTGTGTCAACAGCTTGGGACTTCAACTCAAACTTTGGTACAAGTCAGCAGGCCTACCGCCTTAAGTTCCCTGTAGTGGTTAACCCAAGTGACCTGACAACCTTTAACTACCCTGAGTCAGTTGTCACCACAAGGCTTAAAGTTCGTGGTACAGGACGTTCAATGCGTATCCGTTATGAAAGCGAACAGGGTAAAGACTTCATTCTGTTAGGCTGGGGTATGATCCAAGGAAGGAACTCACGTTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
12c3cccee280d6b33b61be0184bf40200a3c065648778305d689fe72d3e6f1bb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7157
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50