Protein

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Genbank accession
YP_007674303.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MGLKSTFINDQDRMGAGTVDKYINTAYDEMKSLSDNLDDLLVVAATLPQLTKYLGSYSVPPTERPNGDTLEDGDYYFDTTSNAIVYYNLSMDSWFAIDPSELVQARDEAVAARDAAQASQAVAELEASNASESAISALNSENAASASQAAAASSESNAHNSELSASSSAIAAAQSSLDAETVFDNFNALYLGAKTVEPLLDNEGNPLQVGATYWNSNNNLLYYWDGSTWTENSSILVTQEFTVDLADGQTVVTAPRDLDNVVVFVIDSITGNERLVQDVDFTVDVDNVTITLNESYNSGSKLYFVFNDIDNAEGYATDLDVTEAQEDLLPLGSSLFKGGDSVTVKDGDNVPSGTTHLRVLVGGEPTIVAMSPVASGVVSLLTETDANVGGTLVTLHVFSNGGYQATDAQLQNITPRIGEQWFNTDDNSTRIGDGVTIGGRKVFNNYDFNGQFLLNKTNNTKTDQELFDEIQSDSNQGNIVKIMDGEFSGNFETSKTPLMGIGASSVLTTPNASPTLTLKRHTPDWDYYKVSSITVNGGESNARCISFDPNDPFAGRWIFDNVMMRDGSRGVAKPRGNIGDVIKNCTFINLDYGYRALGDASNPMHGGSTTMVQSHMDNINVACYMSEDSVDGGGGYVIKDTIFEQCPGFGVYLDFTGVGAPYTPPSANNLWLEAVATAPSVNLDGNAVAPREFYLKDVNPYIVRDTFFKNIELINSTMIAEKCRIDDSFGSGFSLNVDDDSVLICDDLYANGQIGGVPFVRSILRQIDTSGTRNLGVRGPLKNSQIPLANVGNATNIASNSYSGAGPWVFNGTFNTNATSVTDGVLNDTCAELVVQNNFTLYGESIGTPTVGKWAVWSIHAKQVSGNGFSVATIGFNWKCGDIYLKQGQWVRSYGIQKVGSDASSCRLQFINTSGGNSTIRLADFYLVEFDTYDEAIEFCNSRTSIKNEI
Physico‐chemical
properties
protein length:950 AA
molecular weight: 102351,50600 Da
isoelectric point:4,24010
aromaticity:0,09263
hydropathy:-0,22842

Domains

Domains [InterPro]
DC_1613
STR
1–201
DC_1613 DC_2319 DC_0287
G3DSA:2.10.10.30
ATT
404–446
G3DSA:2.10.10.30
YP_007674303.1
1 950
Architecture
STR
STR
ATT
RBD
STR 1-201 | STR 270-403 | ATT 404-446 | RBD 633-947 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007674303.1
1 950
Domain Start End Length (AA) Confidence
N-terminal 1 461 461 0,9957
Central domain 462 779 319 0,9856
C-terminal 780 950 170 0,9884
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-461
Central
462-779
C-terminal
780-950

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage pYD6-A
[NCBI] 		754052 Uroviricota > Caudoviricetes > Schitoviridae > Matsuvirus > Matsuvirus pYD6A
Host Pseudoalteromonas sp. YD6
[NCBI] 		728062 Bacteria > Proteobacteria > Gammaproteobacteria > Alteromonadales > Pseudoalteromonadaceae > Pseudoalteromonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674303.1 [NCBI]
Genbank nucleotide accession
NC_020849.1 [NCBI]
CDS location
range 69495 -> 72347
strand -
CDS
ATGGGTTTAAAATCAACCTTTATTAATGATCAAGATCGTATGGGAGCAGGTACCGTCGATAAGTACATTAATACTGCCTACGATGAAATGAAGTCTTTATCTGATAACTTAGATGACTTACTGGTTGTGGCTGCTACGTTGCCTCAGCTAACTAAATATCTTGGTTCATATAGTGTACCCCCTACAGAACGTCCTAATGGAGATACACTAGAAGACGGTGATTACTACTTCGATACTACTAGTAATGCCATTGTATACTACAACCTATCTATGGATTCGTGGTTTGCTATTGATCCATCTGAATTAGTTCAGGCTCGGGACGAAGCAGTTGCAGCAAGGGATGCCGCACAAGCATCGCAAGCAGTTGCAGAATTGGAAGCTTCTAATGCCTCTGAGTCTGCTATTTCTGCATTAAATTCTGAGAATGCTGCGTCAGCTAGTCAAGCGGCTGCTGCGTCGAGTGAGTCCAATGCGCATAATAGTGAATTGAGTGCTAGCTCATCTGCAATTGCGGCAGCACAATCCTCATTAGATGCAGAAACAGTTTTTGATAATTTTAATGCTTTATACTTAGGAGCTAAAACTGTAGAACCTTTGTTAGATAATGAGGGTAACCCTCTTCAAGTAGGAGCCACTTACTGGAATAGCAACAACAATTTACTATATTACTGGGATGGTTCAACTTGGACAGAAAACTCGTCTATTTTAGTAACGCAGGAATTTACTGTTGATCTTGCTGATGGACAGACTGTAGTTACTGCACCACGAGATCTAGATAATGTCGTAGTATTTGTTATTGATAGCATTACAGGTAATGAGCGTCTGGTTCAAGACGTAGATTTTACTGTAGATGTTGATAATGTGACTATCACATTAAACGAATCATATAACTCTGGTTCAAAACTATATTTCGTTTTCAATGATATTGATAATGCAGAAGGATATGCGACTGATTTAGATGTTACTGAAGCGCAAGAGGATTTATTGCCTCTTGGTTCGTCATTATTTAAAGGTGGCGATAGTGTAACGGTTAAAGACGGAGACAACGTACCATCTGGTACTACGCACCTTCGAGTTTTGGTTGGTGGTGAACCTACTATTGTTGCGATGTCACCCGTTGCGAGTGGTGTTGTGAGTTTATTAACTGAAACTGACGCCAATGTTGGAGGCACACTTGTAACGTTGCATGTATTCAGCAACGGAGGATATCAAGCCACTGATGCGCAATTGCAGAATATTACGCCGAGAATAGGAGAGCAGTGGTTTAATACCGACGACAACTCTACCCGCATAGGTGACGGTGTTACCATTGGTGGGCGAAAAGTGTTCAATAATTACGACTTTAACGGTCAGTTTTTATTAAACAAAACCAACAATACGAAGACTGATCAAGAGCTTTTTGACGAAATTCAATCCGATTCAAATCAAGGTAACATTGTTAAAATCATGGATGGTGAGTTTTCAGGTAATTTTGAAACATCTAAAACGCCATTGATGGGGATTGGAGCGTCATCAGTGTTAACCACGCCAAATGCAAGCCCTACTTTAACATTAAAGCGTCACACGCCAGATTGGGACTATTACAAGGTGTCAAGCATCACAGTTAATGGTGGCGAATCAAATGCGCGTTGCATAAGTTTTGACCCAAACGATCCGTTTGCAGGGCGATGGATATTCGACAACGTTATGATGAGAGATGGCTCACGGGGCGTGGCTAAACCGCGTGGAAACATAGGCGATGTAATTAAAAACTGCACATTTATCAATTTAGATTACGGATACCGCGCACTTGGGGATGCATCGAACCCAATGCACGGCGGCTCTACAACCATGGTGCAATCACACATGGATAACATCAATGTTGCGTGTTACATGTCAGAGGATTCAGTTGACGGAGGCGGTGGCTATGTAATAAAAGATACGATATTTGAGCAATGCCCTGGATTCGGTGTTTATTTAGATTTCACTGGCGTTGGTGCGCCATACACTCCACCATCTGCCAACAACCTGTGGCTGGAGGCTGTTGCAACCGCACCTAGTGTTAATCTTGACGGTAACGCTGTTGCGCCCAGAGAGTTTTACCTAAAGGATGTGAATCCTTACATTGTTAGGGATACTTTCTTTAAAAACATTGAGCTAATAAATTCTACGATGATTGCTGAGAAATGCAGAATAGATGACTCGTTTGGCTCTGGGTTTAGTTTGAATGTTGATGACGACAGTGTGCTTATATGTGATGACCTTTATGCCAATGGTCAAATTGGTGGTGTGCCATTTGTACGCTCAATACTTCGACAGATTGACACGTCTGGGACAAGAAACTTAGGCGTTAGAGGGCCGCTAAAAAACAGTCAAATACCACTGGCAAATGTAGGAAATGCGACAAACATTGCAAGCAATAGTTATTCTGGTGCTGGGCCGTGGGTGTTTAATGGCACGTTTAACACAAATGCAACATCTGTAACCGATGGCGTTTTAAATGATACGTGTGCTGAATTAGTAGTGCAGAACAACTTTACTTTATACGGTGAGTCAATAGGAACGCCAACGGTCGGTAAGTGGGCGGTATGGAGCATTCATGCCAAGCAGGTTAGTGGTAATGGATTCTCAGTGGCTACAATCGGATTTAACTGGAAGTGCGGAGATATCTATCTTAAACAAGGTCAATGGGTTCGAAGTTACGGAATACAAAAGGTTGGGAGCGACGCCAGCTCGTGTAGACTTCAGTTTATCAATACGTCTGGTGGAAATTCTACAATAAGGCTCGCAGACTTTTACCTGGTCGAATTTGATACATACGATGAAGCTATAGAGTTTTGCAACTCTCGAACTTCTATAAAAAACGAGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
007aa2357c130ded7b61b380ceef66f0698f8b124ba626030e9b79a73283d24d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6515
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Pseudoalteromonas phage pYD6-A Henn,M.R., Wolf,A., Jost,G., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank