Protein

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Genbank accession
QBJ03313.1 [GenBank]
Protein name
scaffold protein
RBP type
TF
Evidence RBPdetect
Probability 0,86
Protein sequence
MAKWNDVVITDMGMQLSAQTLAGKKIVYTHAQTTDLDLSGKTPDQIQAMTELTSVKQDIPISSISVNDKETVKIFVKITNEGVKQDYMLYGLAVFAKIDDNPEVLYEVVTAQKPDLVPALTGTTLSGINFSLLTHVAKSENASIVVGAGGLNEDEVLELINDHTIDLSDYVTQQQLATKVTDLNNGLNAKVTDNHDGTEQLNGVKVHPFNKLSDTIGGRNYLTNTANPTMSNPIQLFGEVAGIAGKADYSAGVVKLTTVTSGETYYRFSGGSTRMPLQAGETYTLSYTISGTDGLYLGTRIIFKENIVSSWEELPISYHKCTTKSMNYKDTFTVPDTALSLIVSVQVYAGTNKNNDNTGTNSVSFSNVMLEKGEVQHDWTPAPEDKVNVSDMRKPANQVASIDEVNAKQDKLDYTPANAANVVARNPDTGVVSEPVDFTKLTVNGGKSVATSDDLKSVADKAWYQLDNKYITPASGYTLAPSTSILYKIDDSTHTLYLSGSIVIPDYPAGLAVTVQLGSIIKSILTVSVVYIGNNSNYNLSFLYADQSSTNLTFIPLTGVVSLCATSGAEGSLSYITYDELI
Physico‐chemical
properties
protein length:582 AA
molecular weight: 62756,65200 Da
isoelectric point:4,71624
aromaticity:0,07388
hydropathy:-0,15258

Domains

Domains [InterPro]
DC_1223
ATT
145–415
DC_1223
G3DSA:2.60.120.260
STR
232–378
G3DSA:2.60.120.260
QBJ03313.1
1 582
Architecture
ATT
ATT 145-415 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage 3-SAC12
[NCBI] 		2510940 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus brevis
[NCBI] 		1580 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBJ03313.1 [NCBI]
Genbank nucleotide accession
MK504442 [NCBI]
CDS location
range 20505 -> 22253
strand +
CDS
ATGGCAAAATGGAATGACGTTGTCATAACTGACATGGGCATGCAGTTGTCAGCACAAACATTAGCTGGAAAAAAGATTGTTTACACCCATGCGCAGACAACTGACCTTGATTTATCTGGCAAAACACCAGATCAAATTCAAGCAATGACTGAATTAACAAGTGTTAAACAGGACATTCCTATCAGTAGTATTTCTGTTAATGATAAGGAAACGGTAAAAATTTTTGTTAAAATTACGAATGAGGGCGTAAAGCAAGACTACATGCTTTATGGATTAGCCGTATTCGCTAAGATTGATGACAACCCCGAAGTGTTATATGAGGTTGTAACGGCGCAAAAACCCGATTTAGTTCCAGCATTAACTGGAACAACTTTATCAGGAATTAACTTCTCACTATTGACACATGTCGCTAAATCAGAAAATGCTTCAATTGTTGTCGGCGCTGGTGGACTTAATGAAGATGAAGTCCTTGAATTAATCAACGATCACACTATTGACTTGAGCGATTATGTAACGCAACAACAGCTTGCAACTAAAGTTACTGATTTAAACAATGGATTGAATGCAAAAGTTACTGATAACCATGATGGTACTGAACAGCTTAATGGAGTTAAGGTACATCCGTTTAATAAGTTATCAGATACTATTGGTGGACGTAACTATTTAACCAATACAGCTAACCCAACTATGAGTAACCCTATCCAGTTATTTGGAGAAGTAGCCGGCATTGCTGGGAAGGCTGATTACTCTGCCGGGGTAGTTAAACTGACTACTGTAACTTCGGGAGAGACATATTATCGCTTCAGCGGGGGCAGTACCAGAATGCCCTTACAGGCAGGGGAAACGTATACTCTTAGCTATACTATATCGGGAACTGATGGCCTATACTTGGGTACTCGTATTATTTTTAAAGAGAATATTGTTTCTTCGTGGGAGGAGTTACCAATTTCTTACCACAAATGTACAACTAAATCCATGAATTATAAAGATACCTTTACTGTTCCTGATACTGCATTGTCACTGATTGTTTCTGTTCAGGTATATGCGGGCACTAACAAAAACAATGACAATACTGGTACAAATTCAGTTTCATTTTCAAATGTAATGTTGGAAAAAGGTGAAGTACAGCATGATTGGACACCAGCCCCAGAAGACAAGGTTAACGTTTCAGATATGCGTAAACCTGCCAATCAAGTTGCCAGCATTGATGAGGTTAATGCTAAGCAGGATAAGCTAGATTACACACCTGCTAACGCCGCTAACGTGGTTGCCCGCAACCCTGACACTGGGGTTGTTTCTGAACCTGTTGACTTCACCAAGCTCACTGTGAATGGAGGTAAATCAGTCGCTACCAGCGACGATTTGAAAAGCGTTGCGGATAAAGCTTGGTATCAGTTAGATAATAAATATATCACTCCTGCTAGTGGCTATACTTTGGCCCCCTCTACTAGCATTTTGTATAAGATAGATGATAGCACTCACACGCTATATTTATCTGGGTCCATAGTGATACCTGATTATCCTGCGGGACTTGCAGTTACCGTTCAACTTGGCAGCATTATTAAGTCAATATTAACTGTAAGTGTGGTGTATATTGGAAATAATAGCAATTACAACTTGAGTTTTTTATATGCTGACCAAAGTTCAACGAATTTAACGTTTATTCCTTTAACGGGGGTCGTAAGTCTTTGTGCAACTTCGGGAGCGGAAGGAAGCCTTTCCTATATCACTTATGATGAACTGATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9b3800e8ec83cfad6c6ba33c84c990ca2444c5f0b6c8c51a366a3e94d87c428e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7076
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of virulent Lactobacillus brevis phages Feyereisen,M., Mahony,J., O'Sullivan,T. and van Sinderen,D. 2019-04-26 — GenBank