Protein

View in Explore
Genbank accession
QXO06427.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
Protein sequence
MAFTHKNQKTFYTDYAIKHGMVPTEDTINLFQVRLKKETTDIYNKFQIVNGKSPLEWNQSENYEVNEIVRYNEVDYKCVQECVNKVPSEEPSFWVVTKYQEYTEFPASNYLAKDNQDPYDPSSMQDYEESNTFHPTTVKHVEDRLKHWFDNETVTNADRLDGEHKDYFCSKQEFDDFVRIALTEESVVDSLESDNRRLPLSAYQGKVLKGLIDHINTILTSNDINLDELQEIVNWIKTNRDMIESLGIDSIKGLRDYLNRIDSDLKKRVTYDYWNAEFLNKIKEVDGHLSGVDADTLDGQHAGYFLPASRFTPEEIALLLQKVPGSLGKIDADKLDGLDSKDFLRRSTSDTPTQDNKFSLGSTALRWSNIYAVNFQGTALQAKYADLAEYYEVPESIKSNIKAGHILGIDACGVNLFNPGMKLFGVVSKNPGVILNNECSGVPIALKGRTPVYCKNEPSVGDYIYADSNGLGIASETELDLPLVGICIGSIINYKDFWICEIKI
Physico‐chemical
properties
protein length:504 AA
molecular weight: 57270,48800 Da
isoelectric point:4,83304
aromaticity:0,10317
hydropathy:-0,48472

Domains

Domains [InterPro]
DC_0964
STR
4–451
DC_0964
G3DSA:2.10.10.90
STR
34–109
G3DSA:2.10.10.90 G3DSA:2.40.300.10
QXO06427.1
1 504
Architecture
STR
RBD
STR 4-451 | RBD 452-486 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXO06427.1
1 504
Domain Start End Length (AA) Confidence
N-terminal 1 452 452 0,7970
Central domain 453 493 42 0,0018
C-terminal 494 504 10 0,9910
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-452
Central
453-493
C-terminal
494-504

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CJLB-14
[NCBI] 		2780166 No lineage information
Host Campylobacter jejuni
[NCBI] 		197 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXO06427.1 [NCBI]
Genbank nucleotide accession
MW074126.1 [NCBI]
CDS location
range 75792 -> 77306
strand +
CDS
ATGGCTTTTACACACAAAAATCAAAAAACCTTTTATACTGATTATGCTATTAAACACGGTATGGTACCTACTGAAGATACTATAAATCTATTTCAAGTTCGTCTTAAAAAAGAGACAACTGATATCTACAATAAATTTCAAATAGTAAACGGAAAATCACCACTCGAGTGGAATCAATCTGAAAACTATGAGGTTAATGAAATTGTAAGATATAATGAAGTAGATTATAAATGTGTGCAAGAATGTGTTAATAAAGTTCCTAGTGAGGAACCTAGTTTTTGGGTCGTTACAAAATATCAAGAATATACTGAATTTCCCGCCAGTAATTACCTAGCTAAAGACAATCAAGATCCTTATGATCCTAGTTCAATGCAAGATTATGAAGAATCTAATACTTTTCACCCAACAACCGTTAAACACGTTGAAGATCGTCTAAAACATTGGTTTGATAATGAAACTGTTACAAATGCTGATAGACTTGATGGTGAACACAAAGATTATTTCTGCTCTAAACAAGAGTTTGATGATTTTGTTAGAATAGCATTGACTGAAGAATCTGTCGTTGATAGTTTAGAATCTGATAATCGCAGATTACCATTAAGTGCTTACCAAGGTAAGGTTCTTAAAGGATTAATAGATCATATCAATACAATTTTAACTTCAAATGACATAAACTTAGATGAACTTCAGGAAATTGTTAACTGGATTAAAACAAATAGAGATATGATTGAATCTTTGGGTATTGATTCTATTAAAGGATTAAGAGATTATTTAAATCGCATAGATTCTGATCTGAAAAAAAGAGTTACTTACGATTATTGGAATGCTGAATTTCTCAATAAAATTAAAGAAGTAGATGGACATTTATCTGGAGTTGATGCTGATACATTAGATGGTCAACACGCAGGTTATTTCTTACCAGCAAGTAGATTTACACCAGAAGAAATTGCTTTATTACTTCAAAAAGTACCAGGATCTTTGGGTAAAATAGATGCTGATAAATTAGATGGATTAGATTCTAAAGATTTCTTGAGACGTTCAACCAGTGATACCCCTACTCAAGATAATAAATTTAGTTTAGGATCTACAGCTTTAAGATGGTCTAATATATATGCTGTTAATTTTCAAGGAACTGCTTTGCAAGCTAAATATGCTGACTTAGCTGAGTATTATGAAGTTCCAGAATCTATTAAATCGAATATAAAAGCAGGTCATATATTAGGCATAGATGCTTGTGGTGTAAATTTATTTAACCCAGGTATGAAATTATTTGGTGTTGTTTCAAAAAATCCTGGTGTAATTCTAAATAATGAATGTAGCGGTGTTCCAATTGCATTGAAAGGTAGAACTCCAGTTTATTGTAAAAATGAACCTAGTGTGGGTGATTATATCTATGCTGATTCTAATGGGTTGGGTATTGCAAGTGAAACTGAATTAGATTTACCATTAGTGGGTATTTGTATAGGTTCTATAATAAATTATAAAGATTTTTGGATTTGCGAGATCAAAATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6040462a38f66487cca6da8c10a87f68171348553966e4fb42e05bf77779fd2f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6844
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages are an effective tool to reduce Campylobacter contamination in foods Vikram,A., Woolston,J. and Sulakvelidze,A. 2017-11-23 — GenBank