Protein

View in Explore
Genbank accession
WYW00627.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFPNQGAQQVNGWSSETQGLQKRPPTKFIKRLGAPGSWGAKPLVHLVNRDAVEQYYMVFTGGGVAVVDLNGNSYQVRGYDGYANCPDPRGDLRLITVADYTFVVNRRTVVQMGSELTHAGYRNPQTRALVACRGGQYGRTLVVEVLIDVTWVKLAEHALPSGIGDNGQAAADMVKMVDAQYIIDILVAQVNTNGAPWKITAAAGPGYMLLHRDDGGSFQGIRTKDGYADQLINGFIYQVQSFNKLPAQAPEGFLVEITGEATRSGDNYWVRYDGLGRVWKETVKPGIIAGLNRNTMPRGLVRAADGQFDWKVLDWNNRASGDNETNPLPSFVDGTINDVFFFRNRLGFLSGENVIMSRSSRYFNFFPPSVASLSDDDPLDIAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSQGILSPKTVELNLTTEFDVQDTARPFGIGRGVYFSAPRAAYTSLKRYYAVQDVSDVKNAEDVSAHVPSYIENRVFNIHGSGTENYVTLLSDGAPGIVYLYKFLYMAEDIAQQSWSHWEFGTQVNVLGCASIGSYMYLLMDRPEGIVLERMEFTAFTKDFPVEPYRTYIDGKVTTVCSEFDEDLFLSYINLSSLYGGAPGSQESFWTIDTDGVGQQHSPPRGGWQGDPRIVLQGDQRGKTYIVGRTYTFLYEFSKFLIKQTADDGTTATEDIGRLQLRRAWLNYESSGSFEINVNNNNGRNTDNDFVYVMAGGRLGAEVRLGELNLGTGQFKFPVTGNAQNQRVTIVSDTPNPLNVIGCGYEGNYIRRSSGI
Physico‐chemical
properties
protein length:807 AA
molecular weight: 89306,14230 Da
isoelectric point:5,51380
aromaticity:0,11152
hydropathy:-0,28563

Domains

Domains [InterPro]
IPR058003
TTP
1–807
IPR058003
WYW00627.1
1 807
Architecture
TTP
TTP 1-807
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW00627.1
1 807
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9947
Central domain 146 357 213 0,0563
C-terminal 358 807 449 0,1100
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-357
C-terminal
358-807

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Voja-1
[NCBI] 		3132638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW00627.1 [NCBI]
Genbank nucleotide accession
PP496434 [NCBI]
CDS location
range 25158 -> 27581
strand +
CDS
ATGGGTCTGGTTAGTCAGTCCGTAAAGAACCTGAAGGGTGGCATTAGCCAACAGCCGGACATCCTCCGGTTCCCCAATCAGGGTGCGCAACAAGTCAACGGCTGGTCGAGCGAGACCCAAGGTCTTCAGAAGCGACCGCCAACGAAGTTCATTAAGCGTCTCGGGGCACCGGGTTCGTGGGGCGCTAAGCCTCTCGTCCACTTGGTCAACCGTGATGCGGTCGAACAGTATTACATGGTGTTCACTGGTGGTGGCGTTGCCGTGGTGGACCTTAACGGAAACAGCTATCAGGTTCGTGGTTACGATGGCTATGCCAACTGCCCGGACCCTCGTGGTGACCTGCGACTGATCACTGTGGCCGACTACACGTTCGTTGTGAATCGACGTACCGTTGTACAGATGGGTAGCGAGCTGACTCACGCTGGTTACCGAAACCCACAGACCCGTGCCCTTGTGGCGTGCCGTGGTGGTCAGTATGGCCGGACGTTGGTCGTTGAGGTCCTTATCGACGTGACGTGGGTGAAGCTGGCCGAACACGCACTGCCCTCAGGTATTGGCGACAATGGTCAGGCTGCTGCTGACATGGTGAAGATGGTGGATGCTCAATACATCATTGACATCCTCGTGGCTCAAGTGAACACGAACGGCGCACCATGGAAGATCACCGCTGCGGCAGGTCCGGGCTACATGCTCCTGCACCGTGACGATGGCGGTTCGTTCCAAGGCATCCGCACCAAGGATGGCTACGCTGACCAGTTGATCAATGGCTTCATCTATCAGGTCCAGTCGTTCAATAAGTTGCCCGCTCAGGCCCCTGAAGGTTTCCTTGTGGAGATCACCGGGGAAGCCACACGCTCAGGCGACAACTACTGGGTCCGTTATGATGGCCTTGGGCGAGTCTGGAAGGAGACCGTTAAGCCGGGGATCATCGCTGGCCTGAACCGTAACACCATGCCTCGTGGTCTGGTACGTGCGGCTGACGGTCAGTTCGACTGGAAGGTACTCGACTGGAACAACCGTGCGAGCGGTGACAACGAGACCAACCCGCTGCCTTCCTTCGTGGACGGTACGATCAACGACGTGTTCTTCTTCCGTAACCGTTTGGGGTTCCTCTCAGGCGAGAACGTGATCATGAGCCGGTCGTCGCGGTACTTCAACTTCTTCCCACCAAGCGTGGCGAGCCTGTCCGATGATGACCCACTGGACATCGCGGTATCCCACAACCGTATCTCGATCCTCAAGTACGCCGTACCGTTCTCCGAACAGTTGCTGCTGTGGTCTGACCAAGCTCAGTTCGTGTTGTCCTCTCAGGGCATCCTGTCTCCCAAGACGGTAGAGCTGAACCTGACCACTGAGTTCGACGTACAGGACACCGCTCGGCCTTTCGGTATCGGACGTGGTGTGTACTTCTCGGCCCCTCGTGCGGCCTATACGAGCCTCAAGCGTTACTACGCAGTGCAGGACGTATCGGACGTGAAGAACGCCGAGGACGTATCAGCGCACGTTCCAAGCTACATTGAGAACCGGGTGTTTAACATCCACGGCTCGGGTACTGAGAACTATGTGACCCTGCTGTCTGACGGCGCTCCGGGTATCGTGTACCTGTACAAGTTCCTCTACATGGCCGAAGACATTGCGCAACAGTCTTGGAGTCACTGGGAGTTCGGTACTCAGGTCAACGTGCTGGGCTGCGCTTCGATTGGCTCCTATATGTACCTCCTGATGGATCGCCCTGAAGGGATCGTACTGGAGCGCATGGAGTTCACGGCTTTCACCAAGGACTTCCCTGTGGAGCCTTACCGGACCTACATCGACGGCAAAGTGACAACCGTGTGCAGTGAGTTCGATGAAGACTTGTTCTTGTCGTACATCAACCTGTCCAGCCTGTATGGTGGCGCACCGGGTTCACAGGAATCCTTCTGGACTATCGACACGGATGGCGTAGGGCAACAGCACTCGCCTCCGAGAGGTGGCTGGCAGGGTGACCCACGGATCGTCCTTCAGGGTGACCAACGGGGCAAGACGTACATCGTTGGCCGAACCTACACGTTCCTCTATGAGTTCTCGAAGTTCCTGATCAAGCAAACCGCTGATGATGGGACCACGGCCACTGAGGACATTGGTCGGTTGCAGCTCCGTCGAGCTTGGCTGAACTATGAGTCTTCTGGTTCGTTCGAGATCAACGTGAACAACAACAATGGCCGCAACACGGACAACGACTTCGTGTACGTCATGGCTGGTGGCCGACTCGGCGCTGAGGTTCGCCTCGGTGAACTGAATCTCGGGACTGGTCAATTCAAGTTCCCGGTAACGGGTAACGCCCAGAACCAACGGGTGACCATCGTGAGCGACACACCGAACCCACTCAACGTGATCGGCTGTGGCTATGAGGGTAACTACATCCGTCGATCCAGCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fc3eeca4593916d0266261ed2dc59268c86e757ff84a773888213c6e4ca1960c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2976
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank