Protein

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Genbank accession
XCO69246.1 [GenBank]
Protein name
putative central straight fiber
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MISNNAPAKMVLNSIMTGYTMAYVQHSIYTDYDVIGRSFWLKIGESIDRRDYTGIDTFFVMINNLTPSTSYEIQGAFYDSIIDSELLEAKIGINLSNETNFKTKEKPTIVAARSESEPVDVGVGAPIVVVETTGEASYCTIELKSTATEDSPWTKYYIGALGSTIKFGGVPIGDYKIRISGQVTMPDGVTVDSSGYYEFPNILTVAYNFIPPTAPINIVFKAARIADGKERYDVRIEWDWERGGGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEHTFKVSSIAWGPNKQDITESAPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDEEGKAPISFDPINRVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWGDNNSGIWMGMDNTSAKAKLDIGNATQWIRYDGDTLRISSGVVIGTPNGDVDIGTGMQGKQTVFVYKLATSLPAKPLEQDYPPPGWSKTPPNRIDMTQNIYATTGTLDPVTNKLLAGTSWSDVVQWSGTEGTIGHDGQRGPGMYSLGIPGLGGWDDGQANAFFQNNFGSPPVRYDVLTEFNSNAPQSAFTRQWNGSGWVSPAMVLHGDMIVNGTVTADKIVAGNAFLSQIGVNIIYDRNAALSGNPEAYYKMKIDLNSGYIHIR
Physico‐chemical
properties
protein length:685 AA
molecular weight: 74792,15940 Da
isoelectric point:4,86464
aromaticity:0,10365
hydropathy:-0,22380

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
103–197
IPR057551
XCO69246.1
1 685
Architecture
STR
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-335 | STR 350-664 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCO69246.1
1 685
Domain Start End Length (AA) Confidence
N-terminal 1 406 406 0,8476
Central domain 407 648 243 0,3105
C-terminal 649 685 36 0,9087
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-406
Central
407-648
C-terminal
649-685

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_Sen_TUMS_E3
[NCBI] 		3229529 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO69246.1 [NCBI]
Genbank nucleotide accession
PP941779 [NCBI]
CDS location
range 31424 -> 33481
strand +
CDS
ATGATTTCGAATAATGCACCAGCCAAAATGGTCTTAAATAGTATAATGACTGGATATACAATGGCGTATGTCCAGCACTCTATATATACTGACTATGATGTTATTGGTAGATCTTTTTGGTTAAAGATAGGAGAAAGTATAGATAGACGTGATTATACTGGTATAGATACTTTTTTCGTAATGATTAATAACCTGACCCCTTCAACCTCCTACGAGATTCAAGGGGCTTTCTACGACTCTATTATTGATTCTGAACTGTTAGAGGCTAAAATTGGTATCAATCTATCTAATGAAACCAACTTTAAGACAAAAGAGAAGCCCACAATTGTTGCAGCAAGATCTGAATCAGAACCTGTGGATGTTGGGGTAGGTGCACCGATAGTTGTCGTAGAAACAACTGGTGAAGCAAGCTATTGTACTATTGAGTTAAAAAGTACAGCTACTGAAGACAGTCCTTGGACCAAGTATTACATTGGGGCTTTAGGTTCTACTATTAAATTTGGTGGAGTTCCTATCGGAGATTATAAGATCAGAATATCCGGTCAAGTAACTATGCCCGATGGTGTTACAGTCGATTCTTCTGGGTATTATGAATTCCCTAATATTTTAACTGTAGCGTATAATTTTATTCCTCCTACCGCACCTATCAATATTGTTTTTAAAGCTGCACGAATTGCTGATGGTAAAGAACGCTATGATGTTAGAATTGAGTGGGATTGGGAACGCGGTGGTGGTGCTAATGTTCGTGAGTTCTTGGTTACATATATAAATTCTGAAGAATACGCTAAGACTGGCTGGGCTAAAGCTCAAAAGATAAACGTTGGTGCTGCCAGAGCTGCAACAATTATATCGTTCCCCTGGAAAGTTGAACATACCTTTAAGGTTTCGTCAATTGCCTGGGGACCAAATAAACAAGATATAACAGAATCAGCTCCTGTAACATTTATATTAAATGAAGATACCCCTCTAGATAACAGCTTTGTCAATGAGACTGGTATTGATGTTAACTATGCCTTTATTAAGGGCAGCATGAAAGATGGGGAAATCTGGAGACAGACATTCTTAATCGATGCAGCTACTGGTGCTATTAACATTGGTCTGCTAGATGAAGAAGGAAAAGCACCTATTTCTTTTGACCCTATAAACCGTGTTGTTAACGTTGATGGTAAAGTAATTACTAGAGATATTAATGCTGCGAACTTTATCATGACCAACTTATCTGGTAAGGATAATCCAGCAATCTACACACAAGGTAAATCTTGGGGGGATAATAACTCCGGTATTTGGATGGGTATGGATAATACTTCAGCCAAAGCAAAACTAGACATCGGTAATGCCACACAATGGATTCGTTATGATGGTGATACTCTTCGTATATCTAGTGGAGTTGTTATTGGAACTCCCAATGGTGACGTAGATATTGGTACTGGGATGCAGGGTAAACAAACAGTATTTGTTTATAAGTTAGCAACATCTCTACCCGCTAAACCGCTAGAACAAGATTACCCACCTCCTGGTTGGTCTAAAACCCCACCTAATCGCATAGATATGACTCAAAATATCTATGCGACTACAGGTACGCTTGATCCAGTAACTAATAAGCTACTTGCTGGTACTAGCTGGTCTGATGTAGTTCAGTGGAGCGGTACTGAAGGTACCATAGGACATGATGGACAACGTGGTCCTGGAATGTATTCCTTAGGTATTCCGGGTCTTGGGGGCTGGGATGATGGACAAGCTAATGCCTTCTTCCAGAATAACTTTGGTAGTCCACCAGTTAGATATGATGTATTGACTGAGTTTAATAGTAATGCTCCACAATCTGCATTTACTCGTCAATGGAATGGTTCCGGTTGGGTTAGCCCAGCAATGGTACTACACGGCGATATGATTGTTAATGGAACAGTGACGGCAGATAAAATTGTAGCAGGAAATGCTTTCTTGTCTCAAATTGGTGTTAATATCATTTATGATAGAAATGCTGCGTTATCCGGGAATCCTGAGGCATACTACAAGATGAAGATAGACCTAAATAGTGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b42fee4ed892adb7a4950858ba164a016b2d6266520af56c6b23d449b8f05504
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8011
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization, and genome analysis of a new Salmonella phage vB_Sen_TUMS_E3 Torkashvand,N., Kamyab,H., Shahverdi,A.R. and Sepehrizadeh,Z. 2023-04-25 — GenBank