Protein

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Genbank accession
WNN13501.1 [GenBank]
Protein name
tail collar domain protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,70
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATLKQIQFKRSKVAGVNPTAAQLAEGELAINLKDRTLFTKDDLGNIISLGFAKGGDINGNVTQNGDYLQNGTYNLNGTQFVYAGKYIEFLPKTAGNGAWANQHQNKAPIFTDLSSTTSTSEYHPLIKQRYKDGTFSVGTLVSEGSFRVHYIDSTAPDNSKHWVFNRNGNFIVDSGSIEVRTGNISASGNINSANGIVSAPQVNTKTIVLDTKAFGQYDSQSLVQYVYPGTGEENGVNYLRKVRAKSGGTIYHEIASAQTGKNDEISWWTGNTLTTKLMGLRNDGAMVLRRSLAIGTITTDENTNNYGSPTPMGERYIALGDAATGLKYIKQGVYDLVGNWNSVASITPDSFRSTRKALFGRSEDQGGTWTMPGTNAAFLSAQTQADGNTAGDGQTHIGYNSAGKMSHYFRGKGKTNINTQEGVEVNPGILKLITGANSISFNAATGNIDSTLAFRLNKGIIIDGPDNQGFQFNAPTAVDGTRSIYWNSGTRPGQNKSPVTVKAWGSAYSTGDKSRETVFEVGDGQGYYFYAQRVAPASGSTVGPIQFRIAGGLLTSGSIVASGSITTESSLNVNNGLSVNGQAKFGGTADALRIWDAEYGAIFRRSEASLHIIPTPKDAGESGGISNLRPLSISLNNGMVQMRHSVTLGDDGAGGNMVTVDNDNKLVVITSHSRISPNYRMQLGQSAYIDAECTDAARPAGAGSFASQNNENVRAPFYMNIDRTDTSTYVPIVKQRYVQNNSCYSIGTLINGGNFRVHYHEGGDGVSTGAVIKDLGWEFNKNGDFYSPGKLGAGNVRIGTDGNITGGSGNFANLNTTINNLKTDIVSSYPIGAPIPWPTDTPPEGYAIMEGQTFDAELYPKLAAVYPSGSLPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASSTDLGTKNTSSFDYGSKTTSSFDYGTKTSNTTGNHSHTVSGNTSSAGAHQHARSGPQIQAGIPNSIFYDGYNSVGANANAKFTGTVNGATAGSNIAKTSSDGAHTHSWSGTTSATGNHAHTVGIGAHTHTVGIGAHSHTVAIGSHGHTITVNATGNTENTVKNVAFNYIVRLA
Physico‐chemical
properties
protein length:1080 AA
molecular weight: 114071,21980 Da
isoelectric point:8,48999
aromaticity:0,08241
hydropathy:-0,41787

Domains

Domains [InterPro]
DC_0538
STR
1–1078
DC_0538
IPR048390
ATT
510–634
IPR048390 IPR051934
SSF88874
STR
821–952
SSF88874 SSF88874
IPR037053
ATT
828–881
IPR037053
IPR011083
ATT
833–880
IPR011083
WNN13501.1
1 1080
Architecture
STR
ATT
STR
ATT
STR
STR 1-509 | ATT 510-634 | STR 635-827 | ATT 828-881 | STR 882-1079 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNN13501.1
1 1080
Domain Start End Length (AA) Confidence
N-terminal 1 765 765 0,0595
Central domain 766 964 200 0,1936
C-terminal 965 1080 115 0,9962
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-765
Central
766-964
C-terminal
965-1080

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PCM001
[NCBI] 		3076816 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Mosigvirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNN13501.1 [NCBI]
Genbank nucleotide accession
OR529306 [NCBI]
CDS location
range 676 -> 3918
strand +
CDS
ATGGCTACATTAAAACAGATACAATTTAAAAGAAGCAAAGTGGCAGGAGTTAATCCTACTGCAGCTCAATTAGCCGAAGGCGAATTAGCGATAAACTTAAAAGATCGAACTCTTTTTACTAAAGATGACCTCGGTAATATTATTAGCCTAGGCTTTGCTAAGGGCGGGGATATTAACGGTAATGTAACTCAAAATGGTGATTATTTACAAAACGGCACATATAATCTTAATGGAACCCAGTTTGTTTATGCAGGAAAGTATATTGAATTCTTGCCAAAAACTGCTGGAAATGGCGCTTGGGCTAACCAACATCAGAATAAAGCCCCTATCTTTACAGATTTGAGTTCAACTACTTCAACTTCTGAATACCACCCTTTGATTAAGCAACGTTATAAAGATGGTACTTTTTCAGTAGGTACATTAGTAAGCGAAGGCTCATTTAGAGTTCATTATATTGATTCTACAGCTCCAGACAATTCTAAACACTGGGTCTTTAACCGTAACGGTAATTTTATTGTAGATTCTGGTAGTATTGAGGTCCGCACAGGTAATATTTCTGCGTCAGGCAATATTAACTCCGCTAATGGTATAGTTTCTGCTCCACAAGTTAATACGAAAACCATTGTTTTAGACACAAAAGCATTTGGACAATATGATTCGCAATCATTAGTTCAATATGTTTATCCTGGAACAGGCGAAGAAAATGGTGTAAACTATCTTCGTAAAGTTCGCGCTAAATCAGGCGGAACTATTTACCATGAAATCGCTTCAGCTCAAACTGGTAAGAATGATGAAATTTCTTGGTGGACTGGAAATACACTTACTACTAAATTAATGGGTCTTCGTAATGATGGCGCAATGGTATTACGTCGTTCACTTGCTATTGGCACAATTACCACCGATGAAAATACTAACAACTATGGCTCTCCTACTCCAATGGGAGAAAGATATATTGCTTTAGGTGATGCTGCCACTGGTTTAAAATATATTAAGCAAGGCGTTTATGATTTAGTAGGTAATTGGAATTCTGTTGCTTCTATTACTCCTGATAGTTTCCGTAGTACTCGTAAAGCATTATTTGGACGCTCAGAAGACCAAGGCGGAACCTGGACAATGCCTGGAACCAACGCTGCATTTTTATCAGCTCAAACTCAGGCTGATGGGAATACAGCTGGTGACGGTCAGACACATATTGGTTATAACTCTGCCGGTAAAATGAGTCATTATTTCCGCGGTAAAGGAAAAACTAATATTAATACTCAGGAAGGTGTAGAAGTTAACCCTGGTATATTGAAGTTAATCACCGGTGCTAACAGTATTAGCTTTAACGCTGCAACAGGTAATATTGATTCTACATTAGCCTTTCGTCTTAATAAAGGCATAATTATTGATGGACCTGATAATCAGGGATTCCAATTTAATGCTCCGACGGCTGTAGATGGTACTAGAAGTATATACTGGAATAGTGGCACACGCCCAGGACAAAACAAAAGTCCTGTTACGGTTAAGGCATGGGGAAGTGCGTACAGCACAGGAGATAAATCTCGTGAAACTGTATTTGAAGTTGGCGACGGCCAAGGTTATTATTTTTATGCGCAGCGTGTAGCTCCCGCTTCAGGATCTACTGTCGGACCAATTCAATTTAGAATTGCTGGTGGTTTATTAACTTCAGGTAGTATTGTTGCTTCTGGTTCTATTACAACTGAATCTTCTTTAAATGTTAATAATGGATTATCTGTAAACGGACAAGCTAAATTCGGTGGAACTGCTGATGCGTTAAGAATTTGGGATGCCGAATACGGTGCTATTTTCCGTCGTTCAGAAGCATCATTACATATTATCCCAACTCCTAAAGATGCTGGTGAAAGTGGTGGAATAAGTAATCTCCGTCCACTAAGTATTAGTCTTAATAATGGTATGGTTCAAATGCGCCATTCTGTTACGTTAGGTGATGATGGTGCTGGCGGTAATATGGTGACCGTTGATAATGATAATAAACTTGTTGTTATAACTAGCCATAGTCGCATTTCTCCTAATTACCGTATGCAGTTAGGTCAGTCGGCATACATTGATGCAGAATGTACTGATGCTGCACGACCTGCTGGAGCCGGTTCTTTTGCTTCACAAAATAATGAAAACGTTCGTGCTCCGTTCTATATGAATATTGATAGAACAGATACAAGCACTTATGTTCCTATTGTGAAACAAAGATACGTTCAAAATAATAGTTGCTATTCTATTGGTACTTTAATTAATGGTGGTAACTTTAGAGTTCATTATCACGAAGGTGGTGACGGCGTTTCTACTGGTGCTGTTATAAAGGATCTTGGATGGGAATTTAATAAAAACGGTGATTTTTATTCTCCTGGTAAATTAGGCGCTGGTAATGTTCGTATTGGTACTGATGGTAATATCACTGGCGGTTCTGGTAATTTTGCTAACTTGAATACCACAATAAATAACCTTAAGACGGATATTGTCTCAAGTTATCCAATTGGTGCTCCGATTCCTTGGCCTACTGATACACCTCCTGAAGGTTACGCCATAATGGAAGGTCAAACATTTGATGCTGAGTTGTATCCTAAGTTAGCTGCTGTGTATCCTTCCGGCTCTCTGCCTGATATGCGTGGTCAAACTATCAAGGGTAAACCATCTGGGCGTGCTGTATTAAGTACAGAAGCAGACGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAAAATACGTCAAGTTTTGATTATGGTAGCAAAACGACTTCAAGCTTTGATTATGGTACTAAGACCAGTAATACCACTGGCAACCATAGCCATACAGTGAGTGGTAATACTAGTTCCGCTGGTGCTCACCAACACGCGCGTTCAGGCCCTCAGATACAAGCCGGCATACCCAATAGCATATTCTATGACGGATATAATAGTGTAGGTGCAAACGCCAACGCTAAATTCACTGGAACCGTGAATGGTGCTACTGCAGGGTCGAATATAGCCAAAACTTCTTCAGATGGTGCCCACACTCATAGTTGGTCAGGAACTACTAGCGCTACGGGTAACCATGCTCATACTGTGGGTATTGGTGCTCATACGCATACTGTGGGTATTGGTGCTCATTCTCATACTGTTGCAATTGGTTCCCATGGACATACAATAACTGTAAATGCCACAGGAAATACAGAAAACACGGTTAAAAACGTTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b69aab35575846c0d041719dc671450556c1f08445f4e882f64d31675398693f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2856
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of Escherichia coli phages Magar,S.N., Ranjit Kumar,S., Anjali,P. and Govindrajan,S. 2022-08-29 — GenBank