Protein

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Genbank accession
YP_009844299.1 [GenBank]
Protein name
baseplate protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MAYETPTPAINSNALVFHAINYFNNLNNCYIVIGKTSSWPVDAQPPVPVDGDNVTEVAGYFKPTCYLCYKTTADKKDDSTLSYGNDFYQPVSLADAYSKKASYVYYTVTIKPDDISNVNTFRQVGLNFGVTLKSGVSGVILTPSNVDNSGYTHFILNSQPFIVTNNRSIKINMLISEEKDISGSNVDTDVTSEITTVLPTTVNQ
Physico‐chemical
properties
protein length:204 AA
molecular weight: 22385,74080 Da
isoelectric point:4,74199
aromaticity:0,10784
hydropathy:-0,18873

Domains

Domains [InterPro]
IPR058040
TAS
14–175
IPR058040
YP_009844299.1
1 204
Architecture
TAS
TAS 14-175 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009844299.1
1 204
Domain Start End Length (AA) Confidence
N-terminal 1 203 203 0,2732
Central domain 204 203 1 0,3218
C-terminal 204 204 0 0,0000
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-203
Central
204-203
C-terminal
204-204

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage SAC12B
[NCBI] 		2510941 Uroviricota > Caudoviricetes > Herelleviridae > Tybeckvirus SAC12B >
Host Lactobacillus brevis
[NCBI] 		1580 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009844299.1 [NCBI]
Genbank nucleotide accession
NC_048754 [NCBI]
CDS location
range 94757 -> 95371
strand +
CDS
GTGGCCTACGAAACCCCTACACCAGCAATTAATAGTAATGCGTTAGTTTTTCATGCTATTAATTACTTTAATAATCTAAATAACTGCTATATAGTAATTGGTAAAACAAGCTCTTGGCCGGTTGATGCTCAGCCTCCTGTTCCTGTTGATGGAGATAATGTCACGGAAGTTGCAGGATACTTTAAGCCAACTTGTTATCTTTGCTATAAAACAACCGCAGATAAAAAAGATGATTCAACATTATCTTATGGAAATGACTTTTATCAGCCGGTTTCCTTAGCAGATGCTTATAGTAAAAAGGCTTCTTATGTATATTATACCGTAACAATAAAACCAGATGATATTTCAAATGTTAATACATTCAGACAAGTAGGTCTTAACTTTGGGGTAACTCTTAAATCTGGGGTATCTGGGGTAATTTTGACTCCAAGCAATGTAGATAATTCTGGATATACTCATTTTATTCTTAACAGTCAACCATTCATTGTTACTAATAATAGAAGCATTAAAATTAATATGCTCATTTCAGAAGAAAAGGATATTAGTGGATCTAATGTAGATACTGACGTTACCTCAGAAATAACAACAGTTTTGCCTACTACTGTAAATCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
43e4b236283bfbc37284755d42a33717f421cc8c99891bca90f18ca1e3ff93fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6663
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of virulent Lactobacillus brevis phages Feyereisen,M., Mahony,J., O'Sullivan,T. and van Sinderen,D. 2019-04-26 — GenBank