Protein

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Genbank accession
BAG75007.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAYDTSAFPLGSKDPRVLYNNAENMDVAMNSVEQERWMDRGPQRPPLPRWTYWGMEQNYNRFISNSAWELPPLVYVDGSPLTVERSSQVIERDGNLYSVKLPASFPVELSGTWSADEPLLVFRSDQSLRQELAEQNGGTLVGWKRTQLSASIDTIQQLADSIPIRVWEFAELVSDKPSPDPATWNWTPAFQAMVDTAESYMQSSGAKQITCYAGPGTFLIDSIVWRSGVHMYFGGAELKAHPDSIDGNSLINATLKLSDIGFYGPGIVNGDKDSFDPEHRQHGIHCVAKKVKVKDLFIENIGSSSVFSLGDGVIFRPTIPEGDFQCEDCEVSGCTFSNIERQCITVESGFNIRILSNGFYNSTYAALDIENAGYTMGDVDGVIFQGNYIDGCLYGVTAVTYQPVDAQRNIVCGGNIYKNVMDAYHFRGCSNVKVGYGDIAEVSRYGAYIYSDGATTVSNIEISDFTTSGGTYGVYAQTTSGGSFNRIKLSTLKITGTSTSPITVQSTSGLRIEEVDVLINTGAGVVIQNCASPIIRNLKMVGAVTLSVPAVSFIGTTTNPRVGGLDIAGFTVGVSVTTSATTTIHSLSNNVFAGVATPWSVNPGNYIKGQFSGTFTMNAAASMNVNSVGMNVTSSVVRLIPTNAAAATLQAGSKMAWVVNSASSNNVSFRVQTADGTAAAGTETFAFVIENL
Physico‐chemical
properties
protein length:692 AA
molecular weight: 74471,57530 Da
isoelectric point:4,83947
aromaticity:0,09538
hydropathy:-0,07298

Domains

Domains [InterPro]
DC_2155
STR
75–691
DC_2155
IPR012334
STR
183–687
IPR012334
IPR011050
STR
185–498
IPR011050 IPR006626 IPR006626
IPR006626
Unmapped
326–348
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
BAG75007.1
1 692
Architecture
STR
STR 75-691 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAG75007.1
1 692
Domain Start End Length (AA) Confidence
N-terminal 1 184 184 0,9857
Central domain 185 601 418 0,9915
C-terminal 602 692 90 0,9745
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-184
Central
185-601
C-terminal
602-692

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PAJU2
[NCBI] 		504346 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAG75007.1 [NCBI]
Genbank nucleotide accession
AP009624 [NCBI]
CDS location
range 18803 -> 20881
strand +
CDS
ATGGCCTACGACACTAGCGCCTTCCCGCTCGGCTCGAAAGACCCTCGCGTCCTGTATAACAACGCCGAGAACATGGATGTCGCAATGAACTCGGTGGAGCAAGAGCGTTGGATGGATCGAGGGCCACAGCGCCCGCCGCTGCCTCGCTGGACATACTGGGGCATGGAGCAGAACTACAACCGCTTCATCTCCAATTCCGCCTGGGAGCTCCCACCGCTGGTATATGTCGATGGCTCCCCGCTAACCGTAGAGCGGTCCAGCCAAGTTATCGAGCGCGATGGAAACCTCTACAGCGTCAAGCTGCCGGCATCGTTCCCTGTCGAACTCTCCGGCACCTGGTCCGCCGACGAGCCGCTGCTGGTATTCCGCAGTGACCAGTCGCTGCGCCAGGAGCTCGCAGAGCAGAACGGCGGCACCCTGGTCGGCTGGAAGCGCACCCAACTTTCCGCGTCGATCGACACAATTCAGCAGCTAGCGGACTCTATTCCAATCCGGGTCTGGGAGTTCGCGGAGCTGGTCTCTGACAAGCCGTCGCCTGACCCGGCGACTTGGAACTGGACGCCGGCGTTCCAGGCGATGGTAGATACCGCTGAGTCCTACATGCAGTCATCTGGAGCGAAGCAAATCACCTGCTATGCCGGGCCTGGCACGTTTCTGATTGACTCAATTGTGTGGCGCTCTGGTGTGCACATGTATTTTGGAGGTGCTGAGCTAAAAGCCCATCCTGACTCTATAGATGGGAACTCGCTAATTAACGCCACCCTTAAGCTAAGTGATATCGGTTTCTATGGCCCTGGAATAGTTAACGGTGACAAGGATAGTTTCGATCCGGAGCATAGGCAGCACGGTATTCACTGTGTAGCGAAGAAAGTAAAGGTGAAAGATCTTTTTATTGAAAATATCGGCAGCAGTTCGGTTTTCTCGTTGGGCGATGGCGTAATTTTTCGTCCAACAATCCCAGAAGGTGACTTTCAATGCGAGGATTGCGAGGTTTCTGGGTGCACATTTAGCAATATAGAAAGACAGTGCATAACGGTTGAGTCCGGATTTAATATCCGGATTTTGTCGAATGGATTCTATAACAGCACTTATGCAGCGCTGGATATCGAAAATGCTGGATATACCATGGGTGATGTTGATGGGGTTATTTTTCAAGGTAACTATATCGATGGATGCCTGTATGGTGTGACTGCTGTGACGTACCAGCCAGTAGATGCTCAGCGCAATATTGTTTGTGGCGGGAATATCTATAAAAATGTGATGGATGCGTATCATTTCCGTGGCTGCTCTAATGTGAAGGTCGGTTATGGTGATATCGCCGAAGTAAGTCGATACGGAGCCTATATTTACTCCGATGGCGCTACTACGGTGAGTAACATCGAAATATCCGACTTCACCACGTCGGGAGGTACGTATGGCGTTTACGCGCAGACAACTAGTGGCGGATCTTTCAATAGGATTAAACTGTCCACCCTGAAGATTACCGGAACATCCACGTCGCCTATCACTGTGCAGAGCACATCTGGATTGCGGATAGAAGAGGTTGACGTGCTGATCAACACCGGCGCAGGTGTTGTGATCCAAAACTGTGCCTCACCAATTATCAGAAACTTGAAGATGGTGGGCGCGGTTACGCTTTCTGTGCCAGCAGTGTCATTCATCGGTACAACTACGAATCCGAGAGTAGGAGGGCTGGATATAGCTGGCTTCACGGTTGGCGTTTCTGTCACCACGTCTGCTACCACGACAATCCATAGTCTCAGTAATAACGTGTTTGCAGGAGTTGCGACCCCATGGTCGGTGAATCCGGGAAACTACATTAAAGGGCAATTCTCTGGAACGTTCACAATGAATGCTGCCGCAAGCATGAACGTCAATAGTGTTGGCATGAATGTGACATCATCTGTTGTGAGGTTGATCCCCACTAACGCGGCAGCAGCAACGCTTCAAGCTGGTTCAAAAATGGCCTGGGTTGTCAACTCGGCGTCGAGTAATAACGTGTCGTTCAGAGTACAGACCGCAGATGGGACGGCGGCGGCTGGTACAGAAACCTTCGCCTTCGTGATAGAGAACCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
79687bbde09fcb39181b12ec9e4ace90abffcf8c26099a60bda10cf204e38a6a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8415
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characteristics of a novel Pseudomonas aeruginosa bacteriophage, PAJU2, which is genetically related to bacteriophage D3 Uchiyama,J., Rashel,M., Matsumoto,T., Sumiyama,Y., Wakiguchi,H. and Matsuzaki,S. 2009 19010363 GenBank