Protein

View in Explore

Genbank accession

AGV99267.1 [GenBank]

Protein name

putative tail fiber

RBP type

Evidence RBPdetect

Probability 0,62

Protein sequence

MANSLKQLMSLSEPELIGLGAQYGLSFHAGMKKSQMAQQLSQSAASGWMEVNKELMSESPDGTYDEMVGFHGTSDMLSDAAHAAQNIHAAGMGGAFQHYMSSGAGWQVEAIDDYLKQLGATAQDVWMHLPKEQEDSHPAAFRALSNYMRDTLVGHQDIMPEIKGHHSGDILKEYSTKLGNIQDSYEHLSHMYLDKSLYENGSQYAHDISRVSARLATQMGSRYLEVAASSAMGAHVSYMSTLPAVGDPSVVGNVAHARQPLNAAGLPLGSTGSAVAGREKYSLASSLTGLPENNPAAQSVYKSIQETVHNLAQVYKGGDNASTGMNPYKHRTSEYDMIMDSATRYNDVADVRSGYANLARELADEPSYSATNIRAILDNNHDKMDAESFAPVGIANPSFSHARLAEVGTSFTANLDSPTNWNSARMRREEKAIADLDASHANFRDVADGGQRSSGTTITYHDEVEQGSPEWHAMRSKYSITGSTIGSYLGNNAYTSPIKEMSDKLGINPKPRASNFDMERGHRLEPIARARVGREFGFNIGESGAITNSDYPDFLYSPDGLIGDDALWEHKAPRKFFDLKEHPDYNDQMQLGMLVSNRQRTLFSQTVGNETRSQWVERDPDWFNRNESRINSTLARMDVGHEVGSDNNFKTPEEAEQAARKAMTGEGIWGFRTKNSGEGYYTGGKRGMSRFSATAGTDADEFAGRRSAFEPNNEDNGYRPNFVMQDSTQTGLSVIGQGSGNGVAIYGQAPSESNPNSLTNSVKEGILLAQEENRQRRGFREINEEYAEDADFEEEGISRSRFDRSNGGGGRRGGGGGGGRTPNPWDEQFGGPAGGAVARGIAGGSVSSATNGLMTAMASTPWGRVAAVAAGAVQIGAELADNANESLGTAQDAGMTNPVAFASQRQGMEMLGLSENQALNVAQTTHSAYNTLLNGDSSGAVRLVQGTRGLLTISDIRETEGDPVALARIIQERGRERGWSQARVAGAMDMAGLGGMARTYQREGAVQRAAEAVRDDGAAAETDDAVTNTQVLRGVVRRASPEYGIQSAYFQHGANYAALAATGVQDALNVGNGVVNAGNSIAAGAENLEGRAKEFLDHFLPNAESGNREYDKHGNRITSPTGARGKYQILPSTARDPGFGLRPSDGTPQDDERLAREYMMTLVDRYNGDYEKANAAYTDGAGTVDKAVKNYGDDWLKHVPQQAQNRVAEYRKWSKSTGAIQQGAGGFAGSPMSNPVPTVINLNVNAQVNNKQATATVVATNGQTTTQTVNMGSGAQQRR

Physico‐chemical properties

protein length:	1279 AA
molecular weight:	137582,52630 Da
isoelectric point:	5,42013
aromaticity:	0,07115
hydropathy:	-0,62533

Domains

Domains [InterPro]

DC_0169
ATT
1–422

DC_0169 IPR051703 DC_0159 G3DSA:1.10.530.10 DC_0800

IPR011604
STR
453–643

IPR011604 IPR023346

IPR011335
Unmapped
463–630

IPR011335 IPR008258

IPR019080
STR
470–598

IPR019080

AGV99267.1

1 1279

Architecture

ATT

STR

RBD

STR

RBD

ATT 1-422 | STR 453-643 | STR 645-1078 | RBD 1099-1114 | STR 1115-1196 | RBD 1197-1279

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0169	ATT	DC_0169	1	422	Novel HMM	DC_0169	N-terminal	Low	Positional only	46 proteins / 46 hits
IPR051703	Unmapped	-	423	630	InterPro	NF-kappa-B Signaling Regulator	-	-	-	-
IPR011604	STR	IPR011604	453	643	Merged direct domain	PD-(D/E)XK endonuclease-like domain superfamily	Central	Low	Positional only	46 proteins / 46 hits
IPR011335	Unmapped	-	463	630	InterPro	Restriction endonuclease type II-like	-	-	-	-
IPR019080	STR	DC_0765	470	598	InterPro cluster	YqaJ viral recombinase	Central	Low	Positional only	44 proteins / 44 hits
DC_0159	STR	DC_0159	645	1078	Novel HMM	DC_0159	Central	Low	Positional only	48 proteins / 48 hits
G3DSA:1.10.530.10	RBD	G3DSA:1.10.530.10	1099	1221	Merged direct domain	G3DSA:1.10.530.10	C-terminal	Low	Positional only	95 proteins / 95 hits
IPR023346	STR	IPR023346	1115	1196	Merged direct domain	Lysozyme-like domain superfamily	Central	Low	Positional only	29 proteins / 29 hits
IPR008258	ENZ	DC_0010	1116	1193	InterPro cluster	Transglycosylase SLT domain 1	C-terminal	High	Text match	100 proteins / 142 hits
DC_0800	RBD	DC_0800	1221	1279	Novel HMM	DC_0800	C-terminal	Low	Positional only	42 proteins / 42 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pectobacterium phage PM1 [NCBI]	1399915	Uroviricota > Caudoviricetes > Chaseviridae > Suwonvirus > Suwonvirus PM1
Host	Pectobacterium carotovorum subsp. carotovorum [NCBI]	555	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Genbank protein accession

AGV99267.1 [NCBI]

Genbank nucleotide accession

KF534715 [NCBI]

CDS location

range 37467 -> 41306
strand +

CDS

ATGGCAAATAGCTTAAAGCAGTTGATGAGTTTATCAGAACCAGAGTTGATTGGTTTAGGTGCTCAATATGGTCTATCCTTCCACGCTGGTATGAAGAAGTCGCAGATGGCTCAACAATTGAGTCAAAGTGCTGCGTCTGGTTGGATGGAAGTTAACAAAGAACTCATGTCAGAAAGCCCTGATGGAACATACGACGAAATGGTCGGGTTTCACGGCACTTCTGATATGCTGTCTGATGCTGCACACGCAGCTCAAAATATTCATGCCGCTGGAATGGGTGGAGCATTTCAACATTATATGAGTAGTGGTGCTGGTTGGCAGGTAGAAGCTATTGATGACTACCTCAAGCAACTCGGTGCCACTGCACAGGATGTTTGGATGCACTTGCCGAAAGAGCAAGAAGATTCTCACCCAGCGGCATTCCGAGCTTTGAGCAACTACATGCGGGATACTTTAGTTGGTCACCAAGACATCATGCCTGAGATTAAAGGGCATCATTCTGGTGACATCCTTAAAGAGTATTCTACAAAGCTTGGAAACATTCAGGATTCATATGAGCATCTGTCTCACATGTATCTTGACAAATCTTTGTACGAAAACGGGTCTCAATATGCGCATGACATTTCAAGAGTTTCTGCACGCTTGGCAACTCAAATGGGAAGCCGTTACTTGGAAGTTGCTGCAAGCTCTGCTATGGGTGCTCATGTATCGTATATGTCTACGTTACCTGCTGTTGGCGACCCGTCTGTTGTTGGGAATGTCGCTCATGCTCGTCAGCCTCTTAACGCTGCTGGACTTCCTCTAGGTTCAACTGGTTCTGCTGTGGCTGGTCGTGAGAAGTATTCTCTTGCATCATCTTTAACAGGTCTTCCGGAAAATAATCCTGCTGCACAATCTGTTTATAAAAGTATTCAAGAAACTGTACATAATCTTGCTCAGGTTTACAAGGGTGGGGATAATGCTTCAACAGGCATGAATCCATACAAACACCGAACTTCTGAGTATGACATGATTATGGATTCTGCAACTCGGTACAATGATGTTGCAGATGTTCGCTCTGGTTATGCCAACCTTGCAAGAGAATTGGCGGACGAACCAAGTTATTCAGCAACAAACATTCGTGCAATCTTGGATAACAACCACGACAAAATGGATGCGGAATCTTTCGCTCCTGTAGGCATTGCCAATCCGAGTTTTAGTCACGCACGTTTGGCGGAAGTTGGAACCAGTTTCACAGCAAACTTGGATTCACCAACGAATTGGAATAGTGCAAGAATGCGCAGAGAGGAAAAAGCAATTGCTGACCTCGATGCATCTCATGCAAACTTCCGTGATGTTGCGGATGGCGGACAAAGAAGTTCAGGAACAACCATAACGTACCATGATGAAGTTGAGCAAGGCTCTCCAGAATGGCACGCGATGCGAAGCAAGTATTCAATTACTGGCTCAACCATTGGTTCTTATCTTGGCAACAATGCGTACACCAGTCCAATAAAGGAAATGTCCGACAAGTTGGGCATCAATCCGAAGCCACGTGCTTCCAATTTTGATATGGAACGTGGTCACCGACTGGAACCTATCGCCCGCGCAAGGGTTGGTAGAGAGTTTGGATTTAATATTGGGGAATCCGGTGCAATCACGAACAGTGATTATCCTGACTTTCTGTACTCTCCTGACGGATTAATTGGGGATGATGCACTTTGGGAGCACAAAGCTCCAAGAAAGTTCTTCGACTTAAAAGAGCACCCCGATTACAACGACCAAATGCAACTTGGTATGTTGGTATCCAATCGTCAGCGAACATTGTTTTCGCAGACTGTAGGGAATGAAACTCGAAGCCAATGGGTTGAGCGTGACCCTGACTGGTTTAACAGAAATGAAAGCAGGATAAATTCAACTCTTGCTCGAATGGATGTTGGACATGAAGTTGGTTCTGACAACAATTTCAAGACACCAGAAGAAGCGGAGCAAGCTGCACGTAAGGCCATGACTGGTGAGGGCATTTGGGGATTCCGCACAAAGAATTCTGGCGAAGGTTACTACACTGGCGGCAAGCGTGGAATGTCTCGGTTCTCTGCAACTGCGGGAACTGACGCTGATGAGTTTGCCGGACGTCGCTCTGCGTTTGAACCCAACAATGAAGATAACGGCTACCGTCCAAACTTCGTAATGCAAGACAGCACTCAGACAGGATTGTCAGTTATTGGGCAAGGTTCAGGAAATGGTGTTGCCATTTATGGGCAAGCTCCATCCGAAAGCAATCCAAACTCATTAACCAATTCTGTTAAAGAGGGTATTCTCCTTGCTCAAGAGGAAAACAGACAAAGACGTGGATTCCGAGAAATCAACGAAGAGTATGCAGAAGATGCAGACTTCGAAGAAGAAGGTATCTCGCGCAGTCGTTTTGACCGTTCAAATGGTGGCGGTGGCCGTCGTGGTGGCGGTGGTGGCGGTGGAAGGACTCCAAATCCGTGGGATGAACAATTTGGTGGCCCCGCTGGTGGAGCGGTTGCTCGCGGAATTGCTGGCGGTTCTGTAAGTTCTGCAACAAACGGACTTATGACAGCAATGGCCTCAACTCCTTGGGGACGTGTAGCTGCTGTTGCTGCTGGTGCTGTTCAAATTGGTGCTGAACTTGCTGATAATGCAAACGAATCTTTGGGCACAGCTCAAGATGCAGGGATGACAAATCCAGTTGCATTCGCCAGTCAAAGGCAAGGCATGGAAATGCTTGGTCTAAGTGAAAACCAAGCACTAAATGTGGCACAAACCACACATTCCGCATACAACACCCTGCTGAATGGCGATAGCAGCGGCGCTGTGAGGCTCGTTCAGGGAACGCGTGGGTTACTAACCATTAGTGATATACGCGAGACTGAGGGCGACCCAGTGGCTCTGGCACGTATAATCCAAGAGCGTGGGCGGGAACGTGGGTGGAGTCAGGCGCGGGTAGCTGGCGCAATGGACATGGCCGGATTGGGCGGCATGGCTCGGACGTACCAGCGGGAAGGGGCTGTGCAACGCGCTGCTGAGGCCGTGCGGGACGATGGCGCTGCTGCTGAAACAGATGATGCGGTTACCAATACACAAGTGTTGCGTGGCGTGGTGAGGCGGGCTAGCCCCGAATACGGCATTCAAAGTGCCTACTTCCAGCATGGTGCAAACTATGCCGCACTTGCTGCAACTGGTGTTCAAGATGCGTTGAATGTTGGAAATGGTGTTGTTAATGCTGGCAATTCTATTGCTGCTGGTGCTGAGAATCTCGAAGGTCGAGCTAAAGAGTTTCTTGACCACTTCTTGCCAAATGCTGAATCTGGAAATCGTGAATATGATAAGCATGGCAATCGAATCACAAGCCCGACTGGTGCTCGTGGTAAGTACCAGATACTGCCTTCAACAGCACGTGACCCTGGGTTTGGTTTGAGGCCATCTGATGGCACTCCACAAGATGATGAGCGCCTTGCACGTGAATACATGATGACTCTGGTTGACCGATATAATGGCGATTATGAGAAAGCCAATGCTGCATACACAGATGGTGCTGGAACAGTTGATAAGGCTGTGAAGAACTACGGTGATGATTGGCTCAAACATGTACCACAACAAGCTCAGAATCGTGTTGCGGAATATCGCAAGTGGAGTAAATCAACTGGTGCAATTCAGCAAGGTGCTGGTGGCTTTGCTGGTTCTCCAATGTCCAATCCTGTTCCGACAGTCATTAACTTAAATGTCAATGCTCAGGTAAACAACAAGCAGGCAACTGCAACTGTTGTGGCAACAAATGGGCAAACCACAACTCAGACTGTAAACATGGGAAGTGGTGCTCAACAAAGACGTTAA

Genome Context

Tertiary structure

PDB ID

8263eaab931a78e7a19ce86cbe15f67a0dd36cefddf130e6cc298c7aa0887f32

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3409

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Complete genome sequence of the Pectobacterium carotovorum subsp. carotovorum virulent bacteriophage PM1	Lim,J.A., Shin,H., Lee,D.H., Han,S.W., Lee,J.H., Ryu,S. and Heu,S.	2014	24643332	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature