Protein

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Genbank accession
CAF34155.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MASILNVESFEAKNGTLEIDVNLDQSRTSSHMQFPRTTSTFVGTPQKGSIRWNTDIEWFELFDGDIWRKFRKLFDFEEAPFLPGIFSFDATNKDSYPETGIRWYDYSSTNHATFVSNPTWSSLNNGYFELGGTNYALVPSTPQTQPENSLTLESWFNSNTNTFVLIAQQYGISSNNAFALYVSSGQWRGGVNIGGTLTEMSHTATTFSTNTWYHYVYSFLGTNTTSVIKGNHVGNSTIVTITEGSLDNFYVGSPISGSAIPSGTTIVSINTSNNTLTLSAAPTSSGQNISYTVTTLAGHYMYINGEFKEFLATTTGSTISYNEVNSFITIGCDFNGPGENTGALLNLDGKISHAKFYSRKITKTIIKDNFNALKGRYGL
Physico‐chemical
properties
protein length:379 AA
molecular weight: 41723,55990 Da
isoelectric point:5,37387
aromaticity:0,13193
hydropathy:-0,28681

Domains

Domains [InterPro]
G3DSA:2.60.120.200
STR
127–262
G3DSA:2.60.120.200 IPR013320
IPR013320
STR
127–257
IPR013320
IPR013320
STR
127–250
IPR013320 IPR013320
PF13385
LEC
131–253
PF13385
CAF34155.1
1 379
Architecture
STR
STR 127-371 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CAF34155.1
1 379
Domain Start End Length (AA) Confidence
N-terminal 1 79 79 0,8727
Central domain 80 278 200 0,1443
C-terminal 279 379 100 0,9661
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-79
Central
80-278
C-terminal
279-379

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-PM2
[NCBI] 		238854 Uroviricota > Caudoviricetes > Pantevenvirales > Nodensvirus > Nodensvirus spm2
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CAF34155.1 [NCBI]
Genbank nucleotide accession
AJ630128 [NCBI]
CDS location
range 65424 -> 66563
strand +
CDS
ATGGCCAGCATATTAAATGTAGAATCATTTGAAGCAAAAAATGGTACTTTGGAGATAGATGTTAACCTTGATCAAAGTAGGACATCTAGTCATATGCAATTTCCTAGAACAACATCAACATTTGTTGGGACACCGCAAAAAGGATCTATTAGATGGAATACTGATATAGAATGGTTTGAATTGTTTGACGGAGATATTTGGAGGAAATTTAGAAAGTTGTTTGATTTTGAAGAAGCACCTTTCTTGCCTGGTATTTTTTCTTTTGATGCTACAAATAAAGATTCATATCCAGAAACAGGTATTAGATGGTATGATTATTCTTCCACAAATCATGCTACTTTTGTATCAAATCCAACTTGGTCTTCTCTAAATAACGGATATTTTGAATTAGGAGGAACAAACTACGCTTTAGTTCCATCGACGCCACAAACACAACCAGAGAATTCTTTAACTCTAGAATCTTGGTTCAATTCTAATACAAATACTTTTGTTTTAATTGCACAACAATATGGCATTTCTTCAAATAATGCATTTGCTTTATATGTAAGTTCTGGTCAATGGAGAGGAGGAGTAAATATTGGTGGTACATTAACAGAAATGTCACACACAGCAACCACATTTTCCACTAACACTTGGTATCATTATGTATACTCATTTTTAGGAACTAATACAACATCAGTAATTAAAGGAAATCATGTTGGAAATAGCACTATAGTTACAATAACAGAAGGAAGTCTTGATAATTTTTATGTCGGATCTCCTATTAGTGGATCAGCGATACCAAGTGGCACTACAATAGTATCTATTAATACATCTAATAATACTCTAACATTAAGTGCTGCTCCAACTAGTTCTGGTCAAAATATTAGTTATACTGTAACTACTTTAGCGGGACATTATATGTACATTAATGGAGAATTTAAAGAATTTTTGGCTACCACAACTGGAAGTACTATTTCATATAATGAAGTAAATTCTTTCATAACAATTGGATGTGATTTTAATGGTCCAGGAGAAAATACTGGTGCGTTATTAAATTTAGATGGAAAAATTAGTCACGCAAAATTCTATTCTAGAAAAATAACTAAAACTATTATTAAAGATAATTTCAATGCACTGAAAGGAAGATACGGGTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d062fb4183f5c1220184919b492abd62c1d554261a719e014b05f4ba146e3df3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8108
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50