Protein

View in Explore
Genbank accession
ALY08128.1 [GenBank]
Protein name
structural protein 2
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTYDTGNPLGSKDPRDLYDNAENFDAAMNDRTNVAWNDRFGVPRKTWFGVEQQVNDWLAAQGFEPGFLVYVDGSPLTVDRPTQLIQRDGNLYSVKRPADFPVNLTGNWATDQDLLVAQADQSLRQDISNATDPYKGSALVGRQPLIINSVAELRLTPGRFSGDRAFLKNYLEGDRKGQRYLTWIPGTSTDDGGMMFSATGGTWHSDLDEHGRVDAQFYGLPLSSGFCTAQDLAIEAYCYPRGIRAFYGPGPDGPGVYDFGDANWAWSGPRVAGQPMKDYQGGGIDFCRTTTLRTTSTDGADVLQCCGIKNAHFTGFPNVTATIDPGATSGSNGVSLVFGAENVTFELNCLDLPAIYKTDGSIDGGQAFTIQPGTGNTNAFRNIKFRGNAKNCSVGFGSDVALNDAASIPLSGIDIDITAEDCYRAFVFGGAAYTSTPSQFAFAGITGKIRAINCQQSVVLARAVGVDINVSILCTKDKSELIKHQYNSSVFVTDIKGSKSCNVDITGRIVNSDSMLSIGGIAMSGGISSSTENIRLRHSVTFSSAATQVSVVDFGGGTVSSSELHLSFLSSGYQPLIDIGGNSVYIDGCLSPVALLPGDESSFVPRCQRATVLYRSPITGVRSINFPSNPLKGQVVKAYRTSAATGGTLSFGGLINMTEGTTQEAIFDGSSWILL
Physico‐chemical
properties
protein length:675 AA
molecular weight: 72069,54830 Da
isoelectric point:4,95320
aromaticity:0,09481
hydropathy:-0,16696

Domains

Domains [InterPro]
DC_1559
ATT
1–165
DC_1559 DC_2031
IPR059934
RBD
147–205
IPR059934
ALY08128.1
1 675
Architecture
ATT
RBD
STR
ATT 1-165 | RBD 166-205 | STR 211-674 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALY08128.1
1 675
Domain Start End Length (AA) Confidence
N-terminal 1 227 227 0,9965
Central domain 228 600 374 0,9927
C-terminal 601 675 74 0,9514
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-227
Central
228-600
C-terminal
601-675

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phi1
[NCBI] 		1754216 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALY08128.1 [NCBI]
Genbank nucleotide accession
KT887557 [NCBI]
CDS location
range 3385 -> 5412
strand -
CDS
ATGACTTACGACACCGGCAATCCGCTTGGCTCCAAAGATCCGCGTGACCTCTACGACAACGCCGAAAACTTCGACGCGGCGATGAATGACCGAACTAACGTGGCGTGGAATGACCGATTCGGTGTGCCAAGAAAAACATGGTTCGGTGTGGAGCAACAGGTCAATGACTGGCTGGCCGCCCAGGGCTTCGAACCTGGATTTCTGGTGTACGTCGATGGCTCGCCGCTGACAGTGGACCGCCCGACCCAACTGATCCAGCGTGACGGAAATCTCTACAGCGTCAAGCGCCCAGCAGATTTTCCCGTCAATCTGACCGGAAACTGGGCCACCGATCAGGATCTACTTGTTGCTCAGGCGGACCAGTCTCTACGTCAGGACATTTCCAATGCTACAGACCCATACAAAGGGTCTGCGTTGGTTGGGAGACAACCACTAATAATTAATTCTGTCGCAGAACTCCGACTGACCCCTGGAAGGTTTTCTGGCGACAGAGCTTTCCTAAAGAACTACCTGGAGGGTGACCGTAAGGGGCAACGGTATTTGACCTGGATTCCAGGGACTTCTACCGATGATGGTGGAATGATGTTTTCTGCTACTGGTGGGACTTGGCATAGTGACCTGGACGAACATGGGCGCGTAGATGCCCAATTTTACGGATTGCCGCTGTCGTCTGGATTCTGCACTGCTCAAGACCTTGCCATCGAAGCGTACTGTTATCCGAGGGGAATTAGAGCCTTTTACGGTCCGGGGCCAGATGGCCCAGGCGTTTATGATTTCGGAGATGCAAACTGGGCATGGTCAGGTCCGCGCGTAGCTGGTCAGCCAATGAAGGACTATCAGGGTGGCGGAATCGATTTCTGCCGGACAACGACTCTGAGAACTACGTCTACCGATGGCGCTGATGTTTTGCAATGCTGCGGGATAAAGAACGCTCATTTTACCGGGTTTCCCAATGTTACTGCCACAATTGACCCTGGAGCCACTAGCGGATCAAACGGGGTTAGCCTTGTATTCGGAGCAGAGAATGTAACGTTTGAGCTTAATTGTTTAGACCTTCCGGCAATTTACAAGACAGATGGGTCTATTGATGGCGGACAGGCGTTCACTATCCAGCCTGGAACTGGTAACACCAATGCATTTAGGAATATCAAGTTCAGAGGCAATGCTAAAAACTGCTCTGTAGGATTTGGATCAGATGTAGCTTTGAATGATGCTGCATCTATTCCTCTTTCAGGAATAGATATTGACATTACAGCTGAAGATTGCTATAGGGCATTTGTCTTCGGTGGCGCGGCATACACCTCAACTCCATCCCAATTTGCATTTGCCGGCATAACCGGAAAGATTCGAGCTATAAATTGCCAACAGTCTGTTGTGCTGGCTCGCGCAGTTGGAGTAGACATAAATGTCAGCATCCTTTGCACGAAGGATAAATCAGAGCTTATCAAGCACCAGTACAATAGCAGTGTATTTGTTACCGATATAAAAGGCTCAAAGAGTTGTAATGTTGACATCACAGGGAGAATTGTTAACTCTGACTCTATGCTAAGCATCGGAGGGATAGCCATGTCTGGCGGCATAAGTTCTTCCACTGAAAATATTAGACTGCGCCACTCTGTCACCTTCAGTTCAGCAGCAACGCAAGTTTCTGTAGTTGATTTCGGTGGAGGTACAGTGTCAAGTTCTGAGTTGCACCTTTCTTTCTTGAGTTCTGGATACCAGCCACTAATCGACATTGGTGGTAATAGCGTATACATTGATGGGTGTCTTTCTCCGGTTGCGCTTTTGCCAGGCGACGAGAGTTCGTTTGTACCGAGGTGCCAGCGCGCAACAGTTTTGTATAGATCGCCAATTACAGGTGTTAGGTCGATAAATTTTCCATCCAATCCACTTAAAGGGCAGGTCGTCAAAGCATATAGAACTAGTGCGGCGACCGGAGGTACTCTTTCTTTTGGTGGATTAATAAATATGACAGAAGGAACGACTCAGGAAGCGATTTTCGATGGATCCTCTTGGATTCTTCTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4e89c6e6cd3b90ad13b642e1d78fc5888d9eb79c7c6fd5b6edbe81f9aa564f05
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7403
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phylogenetic Distribution of CRISPR-Cas Systems in Antibiotic-Resistant Pseudomonas aeruginosa van Belkum,A., Soriaga,L.B., LaFave,M.C., Akella,S., Veyrieras,J.B., Barbu,E.M., Shortridge,D., Blanc,B., Hannum,G., Zambardi,G., Miller,K., Enright,M.C., Mugnier,N., Brami,D., Schicklin,S., Felderman,M., Schwartz,A.S., Richardson,T.H., Peterson,T.C., Hubby,B. and Cady,K.C. 2015 26604259 GenBank