Protein

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Genbank accession
WAX24471.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,73
Protein sequence
MRQAVRQKSTNGSTTRLPTSKAGFIPSPTKGWYVGANLSAAPKGTAYILDNAFPQQDYVRMRGGSLAYATGMPNAAVNTLIPYINGLSSKFFAGCSGSIYDVSSSGVVGAAAVSGLNSSAYLEYTQFTNSGATWLMVVNGVDAAQLYNGTSWTTTPAITGLSGGNLAFVWPFRNRIYGVQAASLTYWYLGLNSIGGAATSVDMSGVFKYGGYLLCGTSWSISSSSGLYEVLVLITSEGEVAIYDGLNPADTVWTIKGLYKISKPLGRRCILKAGGDLAIMTEDGIIPMSSAMTLDQIALQNVAVTKPIAPAWRDAVVARQGLVGWQIVTWPLQSMGIINLPKTSTGDATQYVANVRTGAWARYLGWDANCFAVYNNALYYGTSDGRVMQAETGGQDDGKNYTWTVFPSYSDLGSPALTKHVKMVKARIQSAYAVTPQITVKVDFDTTKPAQPTASFSNAGGALWDSAIWDAAIWPAALTDLSNWTDAEGFGAMVSPVIQLTLSTTATPDVRLTAIELLYENGNPLG
Physico‐chemical
properties
protein length:526 AA
molecular weight: 55883,63390 Da
isoelectric point:7,52170
aromaticity:0,10646
hydropathy:0,06217

Domains

Domains [InterPro]
DC_0395
STR
1–526
DC_0395
WAX24471.1
1 526
Architecture
STR
STR 1-526
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAX24471.1
1 526
Domain Start End Length (AA) Confidence
N-terminal 1 384 384 0,7690
Central domain 385 515 132 0,1613
C-terminal 516 526 10 0,9554
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-384
Central
385-515
C-terminal
516-526

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage ppBjS10J-1
[NCBI] 		3003365 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAX24471.1 [NCBI]
Genbank nucleotide accession
OP596615 [NCBI]
CDS location
range 17976 -> 19556
strand -
CDS
GTGAGGCAGGCGGTTCGGCAGAAGAGCACCAACGGCAGCACCACTCGGCTGCCGACGTCGAAGGCCGGCTTTATCCCGAGCCCGACCAAGGGCTGGTACGTCGGCGCCAACCTGTCTGCGGCGCCCAAGGGCACCGCCTACATCCTCGACAATGCGTTCCCGCAGCAGGACTACGTTCGCATGCGTGGCGGCTCGCTGGCCTATGCCACGGGCATGCCTAACGCTGCGGTCAACACGTTGATCCCCTATATCAACGGGCTCAGCAGCAAGTTCTTCGCTGGGTGTAGCGGCAGCATCTACGATGTCAGCAGCTCGGGCGTGGTTGGTGCTGCGGCGGTGTCGGGCCTCAACTCGTCCGCTTATCTCGAATACACCCAGTTCACCAATTCCGGCGCGACCTGGCTGATGGTGGTGAACGGCGTTGACGCGGCGCAGCTCTACAACGGCACGAGCTGGACGACGACGCCGGCAATTACGGGCCTGAGTGGCGGCAATCTCGCGTTTGTCTGGCCGTTCCGGAACCGGATTTACGGGGTGCAGGCCGCAAGCCTGACGTACTGGTATCTCGGGCTAAATTCGATCGGTGGCGCTGCAACGTCGGTCGACATGTCCGGCGTGTTCAAATATGGCGGCTATTTGCTTTGCGGGACGTCGTGGTCGATCTCGTCGAGCTCCGGTCTTTATGAGGTCTTGGTCCTCATCACGTCCGAGGGTGAGGTCGCGATCTATGATGGGCTGAACCCGGCCGATACCGTATGGACGATAAAGGGTCTCTATAAGATATCCAAGCCCTTGGGGCGGCGATGCATCCTCAAGGCCGGTGGCGATCTCGCCATCATGACGGAAGACGGTATCATCCCGATGTCGTCGGCGATGACGCTGGACCAGATCGCGCTTCAGAACGTCGCCGTGACCAAGCCGATCGCTCCGGCATGGCGTGATGCAGTCGTCGCCCGGCAGGGCCTCGTTGGATGGCAGATCGTGACGTGGCCCTTGCAGAGCATGGGCATCATCAACCTGCCAAAGACCAGCACGGGCGATGCCACGCAATATGTGGCGAACGTCCGAACCGGAGCCTGGGCGCGATATCTCGGCTGGGATGCGAACTGCTTCGCGGTCTATAACAACGCGCTTTACTACGGCACGTCAGACGGTCGGGTGATGCAGGCAGAGACCGGCGGTCAGGACGACGGCAAGAACTACACATGGACCGTGTTCCCGTCCTACAGCGATCTGGGCAGCCCGGCGCTCACAAAACACGTCAAGATGGTGAAGGCGCGCATCCAGTCAGCCTATGCAGTCACGCCTCAGATCACTGTCAAAGTTGATTTCGACACGACCAAGCCCGCGCAACCAACTGCGAGCTTTTCGAACGCGGGCGGCGCACTGTGGGACTCGGCGATCTGGGACGCCGCGATCTGGCCCGCTGCATTGACCGACCTTTCGAATTGGACCGATGCGGAGGGATTTGGAGCGATGGTTTCGCCCGTCATCCAACTGACGTTGTCGACCACGGCGACGCCGGACGTGCGGTTGACCGCGATCGAACTGCTTTACGAAAACGGCAATCCGCTTGGTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
2ce0f9bb6ccdadd6ec38fb0c0dfe22ef9986fa604c940899231426d1799d8014
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9174
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Spontaneously produced lysogenic phages are an important component of the soybean Bradyrhizobium mobilome Joglekar,P., Ferrell,B.D., Jarvis,T., Haramoto,K., Place,N., Dums,J.T., Polson,S.W., Wommack,K.E. and Fuhrmann,J.J. — — GenBank