Protein

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Genbank accession
YP_009797801.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAGLTKVGYSTLQIAVDSIEELRGTRNLIPSTFVLVENYYKGVLGGGGLFYIDTEDTSSEGDGGYTIINQTGQRLKRKLDGVCRWSDFGILPGMPMATTKEQCEAVWSYGLSKGFTRYETVMWGELELGHPLLFQVPATWDKGAISFVGTGVLKFKYDFVKGKPDDVVEIIVKLEDLSGHTPIHTVFNFDNKGMGRYEGKSIRYTALRHTTAKCSHIKIKGQNNYGYALFLYGGDNSVVYADLYNCNGQNLIRSPEGSYDSFGDGVYVAARNVTIDTPRIVTTQGGRAGIVFEGTWLDRVGGEVINPQIEGYDRGIHIECINNRMEAVSIRGGRIQDCNTSVLVFNGATTDMSSDMSVIIDGLSSRRDKVVSEHANPSGFSEGHIMVSGVNAQVISKGCSFQAHTKAVTVVGNGKWISEGDRMFVNSGGINAPYARMVEINNLYAPTTRENIDVTGTLVFTNSIWGGNVNIKGGFRSVLDNVEFSRQGGYANCGQISLVGSIAAIVRNLRFQYPNGWAIDNTQTKQIPECPIIENVAIYTTSANKATLQRNEESGANNRYRRAIPSYIADGTSWTIIN
Physico‐chemical
properties
protein length:578 AA
molecular weight: 63257,53840 Da
isoelectric point:6,34729
aromaticity:0,09516
hydropathy:-0,22457

Domains

Domains [InterPro]
DC_0717
ATT
2–110
DC_0717
IPR059934
RBD
16–78
IPR059934 DC_1490
YP_009797801.1
1 578
Architecture
ATT
STR
ATT 2-110 | STR 111-578
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009797801.1
1 578
Domain Start End Length (AA) Confidence
N-terminal 1 98 98 0,9899
Central domain 99 543 446 0,9930
C-terminal 544 578 34 0,9049
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-98
Central
99-543
C-terminal
544-578

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage vB_CroP_CrRp3
[NCBI] 		2079275 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter rodentium
[NCBI] 		67825 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009797801.1 [NCBI]
Genbank nucleotide accession
NC_047920.1 [NCBI]
CDS location
range 7502 -> 9238
strand -
CDS
ATGGCAGGTCTTACTAAGGTAGGATATTCTACCTTACAAATTGCAGTAGATAGCATAGAGGAGTTAAGAGGTACTAGAAACTTAATACCGAGTACCTTTGTTCTTGTTGAAAACTACTATAAAGGTGTTTTAGGTGGTGGTGGGCTATTCTATATAGACACAGAAGACACTTCATCAGAAGGTGATGGAGGTTATACTATTATAAATCAAACAGGGCAAAGACTGAAAAGAAAACTAGACGGTGTTTGTCGATGGTCAGATTTTGGTATTCTCCCTGGAATGCCTATGGCAACAACGAAGGAGCAATGTGAAGCTGTATGGTCTTATGGTCTATCCAAAGGCTTTACTAGGTATGAAACAGTTATGTGGGGAGAGTTAGAACTAGGACACCCATTGCTGTTTCAAGTACCTGCAACTTGGGATAAAGGTGCAATCTCCTTTGTTGGTACAGGTGTGTTGAAGTTCAAATACGATTTTGTAAAAGGCAAACCAGATGATGTTGTAGAGATTATAGTCAAGCTGGAAGATTTGTCTGGCCACACACCGATCCATACTGTATTCAACTTCGATAATAAAGGTATGGGTCGATATGAAGGTAAGTCCATTCGTTATACAGCGTTGCGTCACACTACAGCTAAGTGCTCCCACATCAAGATTAAAGGGCAGAACAACTATGGATATGCTTTGTTTCTTTATGGAGGTGACAACAGCGTAGTCTATGCAGACTTATACAATTGTAATGGTCAAAACCTAATTCGGTCGCCAGAAGGCTCTTATGATAGTTTTGGTGATGGGGTGTATGTTGCAGCACGTAATGTGACAATTGACACACCTAGAATAGTTACAACACAAGGAGGTCGTGCCGGAATAGTGTTTGAGGGTACATGGCTAGACCGTGTTGGCGGTGAAGTTATTAACCCGCAAATTGAAGGTTATGACCGTGGCATTCACATTGAGTGCATAAATAATAGAATGGAGGCTGTAAGTATCCGAGGTGGGCGCATACAGGATTGCAATACCTCAGTGCTGGTGTTTAATGGCGCTACTACAGATATGAGCAGTGATATGTCTGTCATTATTGATGGTCTTTCATCTAGACGAGATAAGGTTGTGTCAGAACATGCCAACCCTTCTGGCTTCTCAGAAGGCCATATCATGGTATCTGGTGTCAATGCACAGGTCATATCCAAGGGTTGCTCCTTCCAAGCTCACACCAAAGCTGTTACTGTCGTAGGTAATGGTAAGTGGATTAGCGAAGGTGATAGGATGTTCGTAAACTCTGGTGGTATCAATGCACCTTATGCACGCATGGTTGAGATCAATAACTTGTATGCGCCGACTACACGTGAGAATATTGATGTTACAGGTACACTAGTCTTTACCAACTCGATATGGGGTGGTAATGTGAATATAAAAGGAGGTTTTCGTAGTGTATTGGATAATGTGGAGTTCTCACGTCAAGGTGGATATGCTAACTGTGGTCAGATTAGCCTAGTTGGTTCTATAGCAGCCATTGTGCGAAATTTAAGGTTCCAATACCCGAATGGGTGGGCTATTGATAATACTCAAACCAAACAAATACCTGAATGTCCAATTATTGAGAACGTTGCAATTTACACTACTTCTGCAAACAAAGCAACATTACAACGGAATGAAGAGTCTGGTGCTAATAACAGGTACCGTCGTGCTATCCCATCTTACATTGCAGATGGCACTTCTTGGACTATAATTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a57cdb8484d4291fe8ecb9c63ca9cfa5e265fcbbe57ccf6a983e73ce8bbb5be8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7781
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Citrobacter rodentium phages Mizuno,C.M., Debarbieux,L. and Roach,D.R. 2008-04 — GenBank