Protein

View in Explore
Genbank accession
AGH56296.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARNVPGTGAVIEPIFDEVFGVRAVRVINGGSSYDPTDPPRLTITGCGTPTTEALLYPIIDEESGRIIHVRVLSRGRGYDPLRLKIIPEQETPNVVNSFNINRIWQTHPNSPTTGSFNADTDRLRIVSDNHPKPSLFVMAEREPGGSTTILDRTFDQTFIYRGGKDVPNPGTRTEQRDKVTGIMANGVLLHTPDWGLDGNAQVNFPINAPKYSYLKNMNSYGAVNDSQTYYYQTNKLIDEFKLGNSVFDWGDIEIFTWNIKVEFDNILVNITPNSLDQSLGNLEVGRRVDEVGGNAYGFIAKIVRDSQNNPTKVYIRNITNGPFAEDDLLLGANGFQFRIDDDPITFPNGIFYIDFGTDAEEFGDFIPGRYYFAPENIRVQRNYLIRWNQSDPSNQHGGGHQMQFSTTQDGVLNGGTLYYNSTGVTENWSTDYENEYQPLFIMNSDESNRIYYYCKNHRYMSGYTGDEGYMILDPTVEVEDHANNYYTKNYYQTNSNDPNTIDKSRHINGHSKILGMSFDGYPIYGPWGQTDSGTVRRESSSYRLKTTAELSGVRPEVVTAGTVTYAVTFANDKFLFDGQTLPFIEFLRGKTYVFNQNDASNVDGLLSQILLLSTTEDGWHGALVGDTSYVYGASHSVTYHLNGSAVSYAAYVSGFSTATTREIRFQVPVDADRLIYVYAYHEADAGVRGVCEGYLLGDLITDFIYDSSVGTLDQYNGRYAVTPDYPDGTYAYFMTEDGSGNPVYPYAIGPEYYGVPLFEGDTVPDLVSQFPTEATGEVVLSTDNPGQVSYIKMTKTGDNFFGSAKAKILGGQGSGATGTPTVQTVTGLSLLNPGRDYATPPTLIFEGGGGQGAQGAAQIDTLGKVTNINIVDPGEFYQEPPFILISGGGGIGAKAEATIFQGEITGINITDPGKGYTSPPNIIFTKLVQLKRKTRARQALNASAIYLTGLVKTLGSTDSEIYVDSTDAYPGSGEIIVDTETISYTSKSEGRFTGLTRGVNFNYDQRVVLDTGQNTPEGVSTYQYNVGDRVVRRVDNANNKVAKVYDWNPNSRELLVTFEVDELAFIDAGIPSTEDAIVQFDAGVAASANSSYQPHIIETETGSTITLLTVPITTLQDRKFQDDDENEDPNNPGTFLGDGIADLVNTGTDYENQINLDGGIFSSLYGIEETQGGQNTTLFQVGDSIKDASIPFRYATIIEAGGLSDGVAHVATLTITVDLTTGNGQNYSTNEVVTGATSGVRGTVVSWSSQTGVLVVQDIVPFNTNNINVGIAGLLYEFSEKNTIVDFLIQNAGTNYTGTPTVAIENTGDIQATATVNMTTAGDQVQSLTITNGGYGIPQTVDGTYNVHPTVTFTNAAGDTTGSGAVAQAILGGELINGNGGASYRIKKIDYQTIIRSK
Physico‐chemical
properties
protein length:1399 AA
molecular weight: 152280,15950 Da
isoelectric point:4,52821
aromaticity:0,10365
hydropathy:-0,34046

Domains

Domains [InterPro]
DC_1338
ATT
2–850
DC_1338
IPR025924
STR
500–563
IPR025924 DC_0155
IPR025924
STR
695–738
IPR025924
AGH56296.1
1 1399
Architecture
ATT
STR
ATT 2-850 | STR 851-1399
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56296.1
1 1399
Domain Start End Length (AA) Confidence
N-terminal 1 359 359 0,8514
Central domain 360 988 630 0,1269
C-terminal 989 1399 410 0,0136
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-359
Central
360-988
C-terminal
989-1399

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage Syn2
[NCBI] 		536473 Uroviricota > Caudoviricetes > Pantevenvirales > Pontusvirus > Pontusvirus syn19
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56296.1 [NCBI]
Genbank nucleotide accession
HQ634190 [NCBI]
CDS location
range 9488 -> 13687
strand +
CDS
ATGGCAAGAAATGTTCCTGGTACTGGTGCCGTAATTGAACCAATTTTTGACGAAGTATTTGGTGTAAGAGCGGTAAGAGTTATAAATGGCGGATCCTCATATGATCCCACAGATCCTCCTCGTTTGACAATTACAGGTTGTGGAACTCCAACAACCGAAGCTTTGTTATATCCAATTATCGATGAAGAATCGGGTAGAATTATTCACGTTCGTGTTTTATCAAGAGGTAGAGGTTACGATCCTCTAAGACTTAAGATTATTCCCGAACAGGAAACACCTAATGTAGTAAATTCTTTTAATATCAATAGAATCTGGCAGACGCATCCAAATTCTCCAACTACGGGATCATTTAATGCTGATACAGATAGACTTCGCATTGTATCTGATAATCATCCCAAACCATCTCTGTTTGTTATGGCAGAGAGAGAACCTGGTGGATCTACTACTATCTTAGATAGAACATTTGATCAAACCTTTATTTACAGAGGCGGTAAAGATGTTCCTAATCCAGGAACTAGAACTGAGCAGCGAGATAAAGTAACTGGCATCATGGCAAATGGTGTCTTACTTCATACTCCTGATTGGGGTCTTGATGGTAACGCACAGGTCAATTTCCCAATCAATGCACCAAAATATTCTTATCTAAAGAATATGAATAGTTATGGTGCTGTCAATGATTCACAAACATATTATTACCAGACAAATAAGTTAATTGATGAATTTAAATTAGGTAATAGTGTTTTTGATTGGGGTGATATTGAAATTTTCACCTGGAATATTAAAGTAGAATTTGATAATATTTTAGTTAATATTACTCCCAACTCATTAGATCAGAGTTTAGGTAATCTTGAAGTTGGTAGAAGAGTTGATGAAGTTGGTGGTAATGCATATGGATTTATCGCTAAGATCGTTAGAGACTCTCAAAATAATCCGACAAAGGTTTACATTAGAAATATTACCAACGGTCCTTTTGCTGAAGATGATTTACTGTTAGGTGCTAACGGATTCCAATTCCGTATTGACGATGATCCCATTACTTTCCCTAACGGTATTTTTTATATTGATTTCGGAACTGATGCAGAAGAGTTTGGTGATTTTATCCCAGGTAGATATTATTTTGCCCCAGAAAATATTAGAGTCCAAAGAAATTATTTAATTAGATGGAATCAATCAGATCCCTCTAATCAACATGGCGGTGGGCATCAGATGCAGTTCAGCACAACTCAGGATGGTGTGTTGAATGGAGGAACTCTGTACTATAACAGCACAGGAGTTACTGAAAACTGGTCAACTGATTACGAAAACGAATATCAACCGTTGTTCATTATGAACTCGGATGAATCAAATCGTATCTATTACTATTGTAAAAATCATCGCTACATGTCAGGTTATACTGGCGATGAAGGATATATGATTCTCGATCCTACTGTAGAAGTAGAGGATCATGCTAATAATTACTATACAAAAAATTATTATCAAACCAATTCTAACGATCCTAATACAATCGATAAGTCTCGACATATAAATGGACACTCTAAAATTTTGGGTATGTCTTTTGATGGATATCCCATTTATGGTCCTTGGGGTCAGACAGATAGTGGAACTGTTCGCAGAGAATCTAGTTCTTATAGATTGAAGACAACAGCAGAATTATCTGGTGTTAGACCAGAAGTTGTTACTGCAGGAACAGTAACTTATGCCGTTACTTTTGCAAATGACAAATTCTTATTTGATGGTCAGACACTGCCATTTATTGAATTCTTGAGAGGAAAAACGTATGTTTTCAATCAAAATGATGCTAGTAACGTAGATGGATTACTTTCTCAGATTTTATTACTCTCCACAACAGAAGATGGTTGGCATGGCGCTTTAGTTGGTGATACTTCTTATGTTTATGGTGCATCTCATTCAGTAACCTATCATTTAAATGGTTCTGCTGTAAGTTATGCTGCATATGTTTCTGGATTCTCTACAGCAACAACACGAGAAATTAGGTTCCAAGTTCCTGTTGATGCTGATCGTCTGATTTATGTTTATGCATATCATGAAGCAGATGCAGGTGTTAGAGGCGTTTGTGAAGGATATTTACTTGGTGATTTGATTACCGATTTTATCTACGATTCTTCCGTAGGAACTCTTGATCAGTACAACGGTAGATATGCTGTTACACCTGATTATCCAGACGGAACCTATGCATATTTTATGACTGAGGATGGTAGTGGTAACCCAGTATATCCATATGCTATTGGTCCTGAATATTATGGTGTTCCTCTGTTTGAGGGCGATACAGTTCCTGATTTGGTTTCTCAATTCCCAACTGAAGCTACAGGTGAAGTTGTTCTGAGTACGGATAATCCAGGTCAAGTATCTTATATTAAGATGACTAAAACTGGTGATAACTTCTTTGGTTCGGCAAAAGCAAAAATTCTTGGTGGACAGGGAAGTGGTGCTACAGGAACTCCCACTGTTCAAACAGTTACTGGTTTATCTTTGTTGAATCCAGGTAGAGACTATGCTACACCTCCGACACTTATCTTTGAAGGTGGTGGTGGACAAGGTGCTCAGGGTGCTGCACAAATTGATACCTTAGGTAAAGTTACCAATATCAATATCGTAGATCCTGGTGAGTTCTATCAAGAACCTCCCTTTATTCTTATTAGTGGTGGCGGTGGTATTGGTGCAAAAGCAGAAGCAACTATTTTCCAGGGAGAAATTACTGGAATTAATATTACCGATCCTGGTAAAGGATACACTTCTCCGCCCAATATTATCTTTACGAAGTTAGTTCAACTTAAGCGTAAAACTAGAGCACGTCAGGCACTTAATGCATCTGCAATCTATCTTACTGGACTGGTTAAAACACTTGGTTCTACAGACAGTGAGATTTATGTAGATTCTACTGATGCATATCCTGGTTCTGGTGAAATTATTGTTGATACAGAAACTATTTCTTACACTTCTAAGAGTGAAGGTAGATTTACTGGTCTGACTAGAGGTGTAAACTTCAACTATGATCAAAGAGTTGTTCTGGATACAGGACAGAATACACCTGAGGGAGTATCTACTTATCAATATAACGTTGGTGACAGAGTTGTTCGTCGTGTTGATAATGCAAATAACAAAGTTGCTAAGGTATATGATTGGAATCCAAATTCAAGAGAACTATTAGTTACTTTTGAAGTTGATGAACTTGCCTTTATTGATGCAGGTATTCCTTCTACTGAAGATGCTATTGTACAGTTTGATGCTGGTGTTGCTGCTAGTGCTAACAGTTCATATCAACCACACATTATTGAAACAGAAACTGGTTCAACTATTACATTATTAACTGTTCCTATCACTACGTTGCAGGATAGAAAATTCCAAGATGATGATGAAAATGAAGATCCTAATAATCCTGGAACATTCTTAGGAGATGGTATTGCAGACTTGGTAAATACTGGAACAGACTATGAAAACCAAATCAATCTTGATGGTGGTATCTTTAGTTCCTTGTATGGTATTGAAGAAACTCAAGGTGGTCAAAACACTACTCTGTTCCAAGTTGGTGATAGCATCAAGGATGCTTCGATCCCCTTCAGATATGCAACTATCATTGAAGCAGGTGGATTAAGTGATGGTGTTGCACACGTTGCAACCTTAACTATTACTGTTGATCTTACAACAGGAAATGGTCAAAATTACAGCACAAACGAGGTTGTTACTGGTGCAACTAGTGGTGTGAGAGGCACAGTAGTTTCTTGGAGTTCTCAAACAGGTGTCTTGGTAGTACAAGATATTGTTCCATTCAATACGAATAATATTAATGTTGGTATTGCTGGACTTTTGTATGAGTTCTCGGAAAAGAATACTATTGTTGATTTCCTGATTCAAAATGCAGGAACTAACTATACAGGAACTCCAACAGTTGCGATCGAAAACACGGGTGATATTCAGGCAACTGCAACAGTGAATATGACAACTGCTGGAGACCAAGTTCAATCTCTTACCATCACAAATGGTGGATATGGTATTCCTCAAACGGTTGACGGAACTTACAATGTTCACCCAACTGTTACATTCACCAATGCTGCTGGCGACACTACGGGTAGTGGAGCGGTTGCACAAGCAATTCTTGGTGGTGAATTGATCAATGGTAATGGTGGTGCATCATATAGAATCAAGAAGATCGATTACCAGACAATCATCCGTTCCAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
541bbb8f9827ec045c641e062fbcd8b661c62576a72a13488c8fcf7499064fd5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4053
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank