Protein

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Genbank accession
AKF12638.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPSLVTEKARVMTAVRMRDSFQSNNLLNHYMVAAKHVPFDDDNNPPMPVNSDDFQYYDMARDIIFGKKITPDDVATAIKNYTWQSGTIYTAYDDKDGDLYKKKFYAITKEGAEYSVFKCLYNNKGKPSTFQPKKSETNIADELYLTNDGYIWKLLYSVSENQYKKFAIGQDVFPCFANPDATENAVDGAIHAIITEFGGSGYNTYANGSFRTIAVNGNNLIHAIQSDGVLSTNTDYYKSCAIHINAGTGAGQLRQIEEYIVTGSDRRILLKNAFTVDPDFSSKFAIAPFVQIEGDGQGAEAVVTINATSNAIHSVQMVRLGEGYTVANATIIANPSTLSANSATVRAILSPQGGHGYDVEKELFASRMVISSQFDGNEGGVFSTDNDYRITAVMVDPVFANTVVTVADITGFTAEQKVTQNNGMSATISAVNLDGANTIRLKNIKGIVEVGETIVASNTSNSSIASADVTLVDRDLTKFDNRSVYSVEAVTPLSEFVIDEKIVQSSTGAYGYLHSVSGNTMFLTGVVGTFSVSDFTVGFEAEFVGESSDAVAKITGFNRPSLVKTAGECIYIQTTTPVERADDQAERLKVLIEF
Physico‐chemical
properties
protein length:594 AA
molecular weight: 64552,32120 Da
isoelectric point:4,82560
aromaticity:0,09764
hydropathy:-0,16397

Domains

Domains [InterPro]
IPR036327
STR
1–247
IPR036327 IPR036327
IPR036327
STR
1–235
IPR036327 G3DSA:2.60.340.10
G3DSA:2.60.340.10
RBD
5–154
G3DSA:2.60.340.10 G3DSA:2.60.340.10
AKF12638.1
1 594
Architecture
STR
STR
STR 1-247 | STR 505-594
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AKF12638.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 340 340 0,6911
Central domain 341 539 200 0,5214
C-terminal 540 594 54 0,7267
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-340
Central
341-539
C-terminal
540-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage phiM7
[NCBI] 		1647403 Uroviricota > Caudoviricetes > Emdodecavirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AKF12638.1 [NCBI]
Genbank nucleotide accession
KR052480 [NCBI]
CDS location
range 55997 -> 57781
strand -
CDS
ATGCCGTCTCTGGTCACTGAAAAAGCAAGGGTAATGACTGCCGTTCGCATGCGCGATTCGTTTCAGTCAAACAACCTCTTGAACCATTACATGGTTGCTGCGAAGCACGTTCCGTTTGATGACGACAACAACCCGCCGATGCCGGTGAACTCGGATGATTTCCAGTATTACGATATGGCGCGGGACATTATCTTTGGTAAGAAGATCACTCCCGATGACGTTGCCACGGCAATCAAGAACTATACGTGGCAAAGCGGCACCATCTATACTGCTTATGACGACAAGGACGGCGATCTTTACAAGAAGAAATTCTACGCTATCACCAAGGAAGGTGCTGAATACTCTGTTTTCAAATGTCTTTACAACAACAAAGGCAAGCCTTCTACGTTTCAGCCGAAGAAGTCTGAAACCAATATTGCCGATGAACTCTATCTGACAAACGATGGATACATTTGGAAGCTGTTATATTCGGTTTCCGAAAACCAGTATAAGAAGTTTGCCATCGGGCAGGATGTGTTCCCGTGCTTTGCGAATCCAGACGCAACCGAGAATGCCGTTGATGGTGCGATCCATGCCATTATTACGGAATTTGGCGGCTCCGGTTATAACACCTATGCGAACGGCTCCTTCCGGACGATTGCGGTCAATGGCAACAACCTGATCCACGCCATTCAGAGTGATGGGGTTCTGTCCACCAACACCGACTATTACAAGAGTTGTGCGATCCACATCAATGCCGGGACGGGCGCGGGACAGCTTCGCCAGATTGAAGAATACATCGTCACCGGTTCTGATCGCCGGATTCTTCTGAAGAACGCCTTTACTGTCGATCCGGACTTCTCTTCGAAATTCGCCATCGCTCCTTTCGTTCAAATCGAAGGTGATGGACAAGGCGCTGAAGCTGTTGTCACGATCAATGCCACTTCAAACGCAATCCATTCGGTTCAGATGGTTCGTCTCGGTGAAGGCTACACGGTCGCCAATGCAACGATCATTGCCAACCCCTCGACCCTGTCGGCAAACAGCGCCACGGTTCGGGCGATCCTGTCCCCGCAAGGTGGACATGGCTATGACGTCGAAAAGGAATTGTTCGCCTCGCGTATGGTGATTTCGTCTCAGTTCGACGGAAACGAAGGCGGCGTATTCTCGACCGACAACGATTATCGAATCACTGCGGTTATGGTCGATCCGGTTTTCGCCAACACGGTTGTCACGGTTGCTGACATCACCGGCTTCACGGCTGAACAGAAGGTCACGCAAAACAACGGCATGTCCGCCACGATTTCGGCGGTCAATCTCGACGGGGCAAACACAATCCGCCTGAAGAACATCAAGGGCATTGTGGAAGTCGGCGAAACCATTGTCGCTTCGAACACATCGAATTCATCTATCGCATCGGCAGATGTGACACTGGTGGATCGCGATTTGACGAAGTTCGACAATCGCTCTGTTTACTCGGTTGAAGCGGTCACGCCTCTCAGCGAATTCGTCATTGATGAAAAGATCGTTCAGTCTTCGACCGGTGCTTATGGGTATCTCCATTCGGTTTCCGGCAACACGATGTTCTTGACTGGTGTGGTTGGAACATTTTCGGTCTCCGATTTTACCGTTGGTTTTGAAGCGGAATTCGTCGGTGAGTCGTCGGACGCTGTCGCAAAAATTACCGGCTTTAATCGACCGTCTTTGGTGAAAACCGCTGGCGAATGCATCTATATACAAACAACGACCCCTGTTGAAAGGGCAGATGACCAAGCCGAAAGGTTAAAGGTACTAATCGAATTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0d5d8502ab76267d9bb0c7e6fcfa90d616ab3d1c2d7e23c964722e43483b0ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6794
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50