Protein

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Genbank accession
YP_010672644.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MPLDGARYISQMTETLPNNTDPRSEGAGQIRAVKRVLKNTFPNIDGPVDVDPDLLNILHQHLFTRGMMMEWTGPINQIPEYWTFADGITVQLAEGGTYTPPDFRDKFSKCASYDSNGLPIEDVGETGGDHNGVASHEHPHTHSRGTMEIEGSMTKISETWADSGEAEGAFEKQGGHPGPKTPRETDTSNTGRMRFKASNNWTGVTSQPEGDGVVAGTDGGNQPAYRITAYIVYVGPHTK
Physico‐chemical
properties
protein length:239 AA
molecular weight: 26017,36110 Da
isoelectric point:5,11945
aromaticity:0,07531
hydropathy:-0,73054

Domains

Domains [InterPro]
DC_0570
ATT
1–65
DC_0570 SSF88874
SSF88874
STR
63–232
SSF88874
YP_010672644.1
1 239
Architecture
ATT
STR
ATT 1-65 | STR 66-232 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vp_R1
[NCBI] 		2059867 Uroviricota > Caudoviricetes > Grimontviridae > Dalianvirus R1 >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010672644.1 [NCBI]
Genbank nucleotide accession
NC_070978 [NCBI]
CDS location
range 84190 -> 84909
strand +
CDS
ATGCCTTTAGATGGAGCGAGATATATATCTCAAATGACAGAAACATTACCTAACAATACAGACCCTCGTTCAGAGGGCGCTGGACAAATTAGGGCAGTGAAGAGGGTGTTGAAAAACACCTTCCCAAATATTGATGGTCCAGTTGATGTGGACCCAGACCTACTTAACATATTACACCAACACCTTTTCACTCGTGGGATGATGATGGAGTGGACAGGACCAATAAACCAGATACCAGAATACTGGACATTTGCAGATGGTATTACAGTACAACTAGCTGAAGGTGGTACTTACACTCCACCAGACTTTAGAGACAAGTTCAGCAAGTGTGCTAGCTATGATTCAAATGGATTACCTATTGAAGATGTTGGTGAAACTGGTGGTGACCACAATGGGGTCGCTAGTCACGAACACCCTCACACTCACTCACGAGGTACAATGGAAATTGAAGGTTCAATGACCAAGATCTCTGAGACATGGGCAGACTCTGGTGAAGCAGAAGGTGCTTTCGAGAAGCAAGGTGGTCACCCAGGTCCTAAAACTCCTCGTGAGACTGATACATCCAACACTGGTAGGATGCGATTTAAGGCATCTAACAATTGGACAGGTGTAACATCCCAGCCAGAGGGTGATGGTGTAGTTGCAGGTACAGATGGTGGTAACCAACCAGCTTACCGTATCACAGCTTACATTGTATATGTTGGTCCACATACTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2e6dab64296dc6e9ff106cb4edbf8d0740c490827d349af991b47bde3a6f8952
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6738
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of a novel phage Vp_R1 lytic to Vibrio parahaemolyticus Ren,H. and Li,Z. 2023-06 — GenBank