Protein

View in Explore
Genbank accession
YP_009834315.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,62
Protein sequence
MAELVISSISNGGIKSNKLSENFSGLNQIKISPKTDTQNKIASINGYSINPVEIDGLECISINNDLSVGIRDVFNFKNSTDVNRFEGWINSIGSGIILMISHGENITTTSINNYFKKIGCIGWSNHWNPSTNTQNTRYAAIYDCGLKKVMVEQFGVSSLINVSLEVVFDTFNDIGVVGYGNNIISDQQEYINEKSKTAEFKTFMNKTLISDMVVNWGETLRFSLETYRDDLAAAAGESIRLYYIGYNGNTSVTSGYVSSLDTSGQWDFVYNDFVVPTTIDRLTVYATSWPVKSQYIGTTGVRTVSVFRKKPVVVKSGTASFGQWGFITEDAIETSGDIAGRIKEKNITAFEYGNLENVSFPHFTYNDGKYIKDPKLVVGKKFSYFISMVYTDTNVPVNRVGSGSDDTIFIGMTTKTHPTGMGHIVTYAGKTITTNEIISCNKEYLYKLEIDSPSMKFYVNGVLVGSTTIEDLARREFEEIRVGSEMSGYIISSEYEDYELPNNSRYYEYPQSEKLPFIKGSSPASGVYYSGSNITPDAGGGWLYCGIGSQLIPAGMKTGSKAYVTIVENNGATLNTGIEMNKRYEVIAERQPAQGLQPRHMFFFRKDGVNWISAGNMSNLKFDVDCYTDPDIISEKPTISWVKNNKYTFNFNGGTMVDIPPVYLINKSGYATFNFIFGYTDFNMYLLDGRSSNTQELQGGWLYISKQKTLTFSSTYMSIVQLDGKPYNGEVITPNIPHSIVVELKKGSVIRNIGGRYSKTECLNGQIWDINIVGDNDSRAYINTQESRFNYYSTGIEDQNNAGVLVYDTVDLSKWKMSDELNSPISVVSNNRFKFVKDVSEGGMTYHLNLPAKGRYRIEYDIDCPRPLFLKDVYGTTVGVGQILKSLPYGRFKGVIYHNHTESSHDSGLYICVPNARNGDVVTVRSLVAYSTKTDAIGYNVAGASYFFNTFEEPQMIGNTMSSWVPNLSNNNYLNILPAWLPQKDSWRLRFVGDNFSSGYYLDNTDKTHGIFITLSSTTLQFVVKNRGSNISNITINHGMTVGKEFDIDIQYNFPDLYIRTNSVISNSTYNHVDGISSDMCMRNSSCIIKQIDMIESTNTVSSSRVYNLVDNGYIIPENDVIQNTLTFRKKLRSVLLKTGGGVVGWDSVLGDVAGNGRLKDDIYIYNNRISKIVSGGSTHSMVIEFEGKVTPYSQLEVTLKIGGILQTKYAYIGTDNYVISKDIDVDNWLEPSSQYKVIDIRPIGLVGVKLQTVNWKKV
Physico‐chemical
properties
protein length:1259 AA
molecular weight: 140564,67380 Da
isoelectric point:5,90048
aromaticity:0,11438
hydropathy:-0,26823

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009834315.1
1 1259
Domain Start End Length (AA) Confidence
N-terminal 1 326 326 0,3025
Central domain 327 699 374 0,9185
C-terminal 700 1259 559 0,4233
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-326
Central
327-699
C-terminal
700-1259

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage AS-zj
[NCBI] 		2024208 Uroviricota > Caudoviricetes > Pantevenvirales > Emmerichvirinae > Ceceduovirus
Host Aeromonas salmonicida subsp. salmonicida
[NCBI] 		29491 Bacteria > Proteobacteria > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009834315.1 [NCBI]
Genbank nucleotide accession
NC_048673 [NCBI]
CDS location
range 12765 -> 16544
strand +
CDS
ATGGCCGAACTTGTTATATCAAGTATTTCAAACGGTGGTATCAAGTCTAATAAATTATCAGAGAACTTTTCTGGATTAAATCAGATCAAGATATCCCCAAAAACAGACACTCAAAATAAAATTGCGTCTATCAACGGATACTCAATTAACCCAGTAGAAATAGACGGTCTTGAGTGTATCAGTATAAACAACGATCTCAGTGTTGGAATCAGAGACGTTTTTAATTTTAAGAATTCAACTGACGTAAATCGGTTTGAAGGTTGGATCAATTCCATTGGTAGTGGGATTATTCTAATGATCTCTCATGGTGAAAACATAACAACTACATCAATCAACAACTATTTCAAAAAAATTGGATGTATTGGTTGGTCAAATCATTGGAATCCATCAACAAACACACAGAACACCCGATACGCTGCAATATATGACTGTGGTCTGAAAAAGGTTATGGTAGAACAATTTGGGGTTAGTTCGCTTATAAATGTTTCTCTAGAAGTTGTTTTTGATACGTTCAATGATATTGGTGTTGTAGGATATGGAAACAATATCATCTCAGACCAACAGGAATATATAAACGAAAAATCAAAAACAGCGGAATTCAAAACATTCATGAATAAAACCCTTATATCTGATATGGTGGTTAACTGGGGCGAAACCCTTAGATTCAGCCTTGAGACGTATAGGGACGACCTAGCGGCGGCGGCTGGTGAATCAATAAGACTATATTATATTGGATATAACGGAAATACTTCCGTTACTTCCGGATATGTCAGTTCTCTTGATACGTCTGGGCAGTGGGATTTTGTTTATAACGATTTTGTTGTTCCAACCACAATAGATAGATTAACCGTATATGCTACGTCATGGCCCGTTAAATCCCAATATATTGGTACTACTGGGGTTCGCACGGTATCCGTATTCAGGAAAAAACCGGTAGTTGTTAAATCCGGAACTGCTTCTTTTGGTCAATGGGGTTTTATTACAGAAGACGCGATAGAAACCAGTGGGGACATCGCAGGTAGAATTAAAGAGAAAAATATTACCGCATTTGAATATGGTAATTTAGAAAATGTCAGTTTTCCACACTTCACATATAATGACGGAAAATATATAAAAGACCCTAAATTGGTAGTTGGTAAGAAATTTTCTTATTTTATATCAATGGTTTATACAGATACCAACGTACCTGTAAACCGGGTTGGATCTGGATCCGATGATACTATTTTCATTGGTATGACAACAAAGACTCATCCTACTGGTATGGGGCATATTGTTACTTATGCTGGAAAAACGATAACCACGAATGAAATAATTTCTTGTAATAAAGAATATTTGTATAAGTTGGAAATTGATAGCCCAAGTATGAAGTTTTATGTCAACGGGGTTTTAGTTGGAAGTACAACAATAGAAGACTTAGCAAGACGAGAGTTTGAAGAAATTCGAGTTGGTTCTGAAATGAGTGGGTATATCATATCTTCGGAGTATGAAGATTATGAGCTACCAAATAATTCAAGATATTATGAATATCCACAATCAGAAAAACTACCTTTTATTAAAGGGTCTTCTCCTGCTAGTGGTGTCTATTATTCCGGTTCCAATATCACACCGGATGCGGGGGGTGGTTGGCTATATTGCGGTATCGGAAGTCAACTAATCCCAGCAGGAATGAAAACCGGTTCTAAGGCTTATGTTACCATAGTTGAAAATAACGGGGCTACGTTGAATACCGGTATTGAAATGAACAAAAGATATGAGGTTATTGCAGAAAGACAACCAGCGCAAGGACTGCAACCTAGACACATGTTCTTCTTTAGAAAAGATGGGGTGAATTGGATATCTGCCGGTAATATGTCAAACCTTAAATTTGATGTCGATTGTTATACGGACCCTGACATAATTAGTGAAAAACCTACTATATCGTGGGTTAAAAACAACAAATACACCTTCAATTTCAATGGAGGTACGATGGTTGATATTCCACCAGTATATTTGATCAATAAATCTGGTTATGCCACATTCAATTTCATTTTTGGATACACAGATTTCAATATGTACTTACTGGATGGAAGAAGTTCTAATACCCAAGAGTTACAGGGTGGTTGGTTGTATATATCTAAACAGAAAACACTCACATTTTCTTCTACATATATGTCCATTGTCCAATTAGATGGGAAACCATATAATGGAGAGGTAATTACACCAAACATTCCACATAGTATTGTTGTTGAACTGAAAAAAGGTTCGGTAATCAGAAATATTGGTGGTAGATATTCAAAAACTGAATGTTTGAATGGTCAAATATGGGACATTAATATTGTCGGGGATAATGATTCCAGAGCATATATAAACACGCAGGAATCTAGATTTAACTACTACTCCACGGGTATAGAAGATCAGAATAATGCTGGTGTATTGGTATATGATACCGTTGATCTGTCTAAATGGAAAATGTCGGATGAACTAAACTCACCGATTAGTGTGGTTAGCAACAACCGATTTAAATTTGTGAAAGATGTATCAGAAGGTGGGATGACATATCATCTTAACTTGCCAGCAAAGGGAAGATACAGAATAGAATATGATATCGATTGTCCAAGACCATTATTTCTTAAAGATGTATATGGGACAACAGTTGGTGTCGGTCAGATTCTAAAATCTTTACCATACGGTAGATTTAAAGGTGTTATTTATCATAACCACACAGAATCGTCTCATGATTCGGGTCTGTATATCTGTGTACCAAATGCAAGAAATGGGGATGTGGTAACTGTCAGAAGCCTAGTAGCATATTCCACAAAAACGGATGCTATCGGCTATAACGTAGCTGGGGCTTCGTATTTCTTTAATACATTTGAAGAACCTCAAATGATCGGGAATACAATGAGTTCTTGGGTTCCAAACCTATCAAATAACAACTACCTAAATATATTACCGGCGTGGTTACCACAAAAAGATTCATGGAGACTGAGATTCGTTGGTGATAATTTCTCTAGTGGTTATTATCTAGATAATACGGATAAAACCCATGGTATATTCATCACTTTATCGTCAACCACTTTACAGTTTGTTGTCAAAAACCGTGGTTCTAATATAAGCAATATTACCATTAACCATGGTATGACTGTTGGTAAGGAATTTGATATTGACATTCAATACAATTTTCCAGACCTATATATCAGAACAAACTCTGTTATTAGCAATTCAACATATAATCATGTTGATGGGATATCTTCTGATATGTGTATGAGGAATTCATCCTGTATCATCAAACAAATTGATATGATAGAATCAACAAATACCGTATCTAGCTCACGAGTTTATAACTTAGTTGACAATGGATATATAATCCCAGAAAACGATGTTATTCAAAATACTCTGACATTCAGAAAGAAGCTACGCTCTGTTCTTCTTAAAACTGGTGGTGGGGTTGTTGGATGGGATTCTGTGCTGGGTGATGTAGCAGGGAACGGTAGGTTGAAGGATGATATCTATATATACAATAATAGGATATCTAAAATTGTTAGTGGTGGTTCAACTCATAGTATGGTCATTGAGTTTGAAGGAAAAGTTACACCGTATTCTCAGCTAGAAGTAACCTTAAAAATTGGTGGTATATTGCAAACTAAATATGCATATATAGGAACTGATAACTATGTTATATCGAAAGATATTGATGTAGATAACTGGTTAGAGCCATCTAGTCAATATAAAGTTATTGACATAAGACCAATTGGTCTGGTAGGTGTAAAACTACAGACAGTTAATTGGAAAAAGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3ef1ff22f0160725b8412a5ddd714b561af46e0e97dd98bbea7152e371574f8a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5183
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
In vitro design and evaluation of phage cocktails against multidrug-resistant Aeromonas salmonicida Chen,L., Yuan,S. and Ma,Y. 2018-07-06 — GenBank