Protein

View in Explore
Genbank accession
AYP28007.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MAKKPTISTLQSGFNSTETLNSNFEKLRDALDNTLSLDGSTPNAMEADLDLNGNNIIGATGLLINGTDYLIDVEAAKAAALVAQAAAELAENNAETAEVNAEASETAAGLLATAASTSATNAATSATAASVSETAAALSETNAATSETNASTSETNAAASALAASTSETNAASSETNAAASETAASTSETNAAASETAASTSETNAATSETNAATSETNAAASEAASSASAAAALTSETAAALSEANASASEAAAGLSETAAAASETAAASSASSASTSASNAASSASSAQASKDAALAALDSFDDRYLGQKVSDPTLDNDGDALVAGALYFNTTDDIMKVYEGSVWVAAYASLSGALLANNNLSDLANVSATRTNLGLGTAATTASTDYATAAQGSLADSAIQPADLATVATTGVYADLTGKPTLGTAAATDSTAYATAAQGALADSAIQAADLATVATTGAYSDLTGTPAPYADADVDTHLNTGTAATGEYLSWNGADYDWATVPAGYADADVDTHLNTGTATTDQVLAWTGSDYDWVDASAGATGGGTDKIFVENGQVVTTNYTVAATTNAMTTGPIDINSGVTVTVETGGRWVVI
Physico‐chemical
properties
protein length:599 AA
molecular weight: 58595,68480 Da
isoelectric point:4,05003
aromaticity:0,04341
hydropathy:-0,03372

Domains

Domains [InterPro]
DC_2003
STR
1–172
DC_2003 DC_2093 DC_1726
IPR004089
STR
74–282
IPR004089 DC_1726
Coil
Unmapped
82–107
Coil DC_0401
AYP28007.1
1 599
Architecture
STR
STR 1-599
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lentibacter phage vB_LenP_ICBM3
[NCBI] 		2301530 Uroviricota > Caudoviricetes > Zobellviridae > Siovirus > Siovirus germanense
Host Lentibacter sp.
[NCBI] 		2024994 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP28007.1 [NCBI]
Genbank nucleotide accession
MF431615.1 [NCBI]
CDS location
range 918 -> 2717
strand +
CDS
ATGGCTAAGAAACCAACAATATCAACTCTACAGTCAGGGTTTAACTCTACTGAGACGTTGAACTCCAACTTTGAGAAACTAAGGGATGCTTTAGATAATACTCTGTCTTTGGATGGTAGTACTCCTAATGCTATGGAGGCAGACCTAGACCTTAATGGTAATAACATTATTGGTGCTACTGGTTTACTTATCAATGGGACTGACTACCTTATTGATGTAGAGGCTGCTAAGGCTGCGGCTTTGGTAGCACAGGCTGCTGCTGAGTTGGCTGAGAATAATGCTGAGACAGCTGAAGTTAATGCTGAAGCATCTGAGACTGCTGCTGGTTTGTTGGCTACTGCTGCGTCTACCAGCGCAACGAATGCCGCAACAAGTGCAACAGCTGCTTCTGTTTCCGAGACAGCTGCGGCTTTGTCAGAAACTAACGCAGCAACTTCCGAAACAAATGCTAGTACCTCAGAGACCAACGCAGCTGCTAGTGCCTTAGCTGCTTCGACATCTGAAACGAATGCAGCTTCAAGTGAAACGAATGCTGCAGCCAGTGAGACTGCGGCTTCTACAAGTGAAACGAATGCTGCAGCCAGTGAGACTGCGGCTTCTACAAGTGAGACCAATGCTGCTACATCAGAAACGAATGCGGCAACAAGTGAGACTAATGCAGCCGCATCTGAGGCTGCTTCTTCTGCATCTGCTGCTGCTGCCCTCACATCTGAAACGGCTGCTGCTTTGTCAGAAGCTAACGCATCTGCTAGTGAGGCTGCGGCTGGGCTGAGTGAAACAGCTGCTGCTGCTTCAGAGACCGCTGCGGCTTCCTCTGCTTCTTCAGCGTCTACTTCTGCTTCTAACGCTGCATCTTCTGCAAGCTCTGCTCAGGCCTCTAAGGATGCAGCCCTTGCTGCTCTGGACTCGTTTGATGATCGTTACCTTGGTCAGAAGGTATCAGACCCTACACTAGATAATGATGGTGATGCACTCGTTGCTGGAGCCTTGTACTTCAACACCACTGACGATATTATGAAAGTGTATGAGGGTTCTGTTTGGGTTGCAGCCTATGCTTCTCTTTCAGGAGCCTTGCTTGCCAACAACAATCTGTCAGACCTTGCAAACGTAAGTGCTACACGTACTAACCTTGGACTTGGTACAGCCGCAACAACAGCATCCACAGACTATGCGACAGCTGCTCAAGGTTCTCTGGCAGACAGTGCAATCCAACCCGCTGACCTAGCTACAGTCGCAACCACAGGTGTTTATGCCGACTTGACGGGCAAACCTACACTCGGTACAGCGGCAGCTACCGACAGTACAGCCTACGCCACGGCGGCTCAGGGTGCTCTGGCGGACAGTGCAATCCAAGCAGCAGACCTAGCCACAGTGGCCACCACAGGCGCTTACAGTGACCTCACAGGCACACCTGCACCCTATGCCGATGCTGACGTAGACACACACCTGAATACAGGCACAGCGGCTACAGGCGAGTACCTCTCATGGAATGGTGCAGACTACGACTGGGCTACAGTACCTGCTGGTTATGCAGACGCCGATGTAGACACTCACTTGAACACAGGCACAGCCACAACTGATCAGGTATTGGCTTGGACAGGCTCAGACTATGACTGGGTTGATGCTTCTGCTGGAGCTACTGGTGGTGGTACAGACAAGATATTCGTTGAGAACGGTCAGGTTGTCACAACCAACTACACCGTAGCAGCAACAACAAATGCCATGACAACAGGGCCAATCGACATCAACTCAGGTGTCACTGTTACTGTTGAGACTGGCGGAAGATGGGTGGTAATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
16080e358fa621716838ca3568854630a9f7edea025d54a7ff3b3d3910d9e466
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6106
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Cobaviruses - a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems Bischoff,V., Bunk,B., Meier-Kolthoff,J.P., Sproer,C., Poehlein,A., Dogs,M., Nguyen,M., Petersen,J., Daniel,R., Overmann,J., Goker,M., Simon,M., Brinkhoff,T. and Moraru,C. 2019 30718806 GenBank