Protein

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Genbank accession
XLQ30283.1 [GenBank]
Protein name
head packaging structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MANEVGTANNLEDLFGKIISFLTTNATLVAANQDWEVLRLRRDNLLSHTSNLNGPSSGANSRYMRHTFRYDPRSINTNNPMANGWEGHFYANNWSAGVSHNTWRLRQAREVKTVRIKAAVGTSYVNAAPKSFRLQYSDDNSSWTTALTVTDTAVFVLGETRDFAVPGTPGAHEYWRILWDKTQSSTTTGNIAWTELLLLQADETVANHFGSEAILKAPGNSGTEAIYTGIRSEYDAAAGWYNLFLNGYTGYDPNVQSWFLQPGAIPGYGATFTKANPMVPCWDAAMPYWFSASGRSFRFGVKVSTNYEGGYLGFILPYATPGQYPYPLAVGGSLVPNEGNRSANWRYSFASYEHGVFPGPGANSGSETESVWATMYVRDPGGDWRHFANRPNRNGSAIDGIQGYSFQYSLPFAVTGGNRSVWPHCENEKWTSGRRPYRECLGGGYIMQPCVLLQRSPSWMVFGELEGVYAISGYQNSAENTTTYNGKTHVIFQNAYRNTVHEFWAMSLD
Physico‐chemical
properties
protein length:509 AA
molecular weight: 56562,97840 Da
isoelectric point:6,60750
aromaticity:0,13949
hydropathy:-0,44322

Domains

Domains [InterPro]
DC_0072
STR
1–205
DC_0072
G3DSA:2.60.120.260
STR
57–198
G3DSA:2.60.120.260
IPR008979
STR
85–156
IPR008979 DC_0072
XLQ30283.1
1 509
Architecture
STR
STR 1-509
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLQ30283.1
1 509
Domain Start End Length (AA) Confidence
N-terminal 1 41 41 0,1345
Central domain 42 246 206 0,5768
C-terminal 247 509 262 0,9431
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-41
Central
42-246
C-terminal
247-509

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PSASB_03
[NCBI] 		3384872 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLQ30283.1 [NCBI]
Genbank nucleotide accession
PQ621116 [NCBI]
CDS location
range 26689 -> 28218
strand +
CDS
ATGGCGAACGAAGTCGGTACCGCAAACAACCTCGAGGATTTGTTCGGGAAGATCATCTCCTTCCTGACGACCAACGCCACGCTTGTAGCGGCGAACCAAGACTGGGAGGTTCTCCGGCTTCGCCGGGATAATCTGCTTTCCCATACCTCGAACCTCAATGGGCCGTCGAGCGGGGCCAACTCCCGCTACATGCGGCACACCTTCCGCTACGATCCACGGAGTATCAACACCAACAACCCGATGGCAAATGGCTGGGAGGGCCACTTCTACGCGAATAACTGGTCCGCTGGAGTCAGCCACAACACCTGGCGCCTTCGACAAGCCCGAGAAGTGAAGACTGTCCGGATTAAGGCGGCCGTTGGTACCTCCTATGTGAATGCGGCCCCGAAGTCTTTCCGTCTTCAATACTCAGACGATAACAGCTCCTGGACCACAGCCCTCACCGTGACCGACACCGCCGTCTTTGTCCTCGGGGAGACCCGGGACTTCGCTGTGCCGGGGACTCCTGGAGCCCACGAGTATTGGCGTATCCTTTGGGACAAGACACAGAGTAGCACCACTACCGGTAATATTGCTTGGACGGAGCTGCTCCTGCTCCAAGCCGACGAGACGGTTGCCAATCACTTCGGAAGTGAGGCCATCCTGAAGGCGCCTGGAAACTCCGGCACAGAGGCTATTTACACAGGTATTCGTTCCGAGTACGATGCTGCTGCGGGTTGGTACAACCTATTCTTGAATGGCTACACGGGGTATGATCCGAACGTCCAGTCATGGTTTTTGCAACCGGGGGCTATCCCCGGCTATGGCGCCACCTTCACCAAGGCTAACCCGATGGTGCCTTGCTGGGATGCCGCGATGCCCTACTGGTTTAGCGCCTCTGGTCGGTCCTTTCGCTTCGGAGTCAAGGTGTCCACCAACTACGAGGGTGGCTACCTTGGCTTCATCCTCCCTTACGCAACGCCGGGGCAGTACCCTTATCCGCTCGCCGTGGGTGGGTCTCTAGTCCCAAACGAAGGCAACCGCTCGGCTAACTGGCGCTACTCCTTCGCCTCTTACGAGCATGGTGTGTTCCCCGGGCCGGGGGCGAACTCCGGTTCGGAGACGGAGAGCGTCTGGGCGACGATGTATGTTCGCGATCCGGGTGGGGACTGGAGGCATTTCGCCAACCGACCGAATCGCAACGGTAGCGCCATTGATGGTATCCAAGGTTACTCATTCCAGTACTCTCTCCCGTTCGCGGTAACCGGCGGGAACCGGTCTGTCTGGCCTCACTGCGAGAATGAGAAGTGGACCTCCGGACGACGCCCGTACCGGGAGTGCCTCGGTGGGGGCTACATTATGCAGCCATGCGTGCTACTCCAGCGCAGCCCCTCGTGGATGGTTTTCGGCGAGCTGGAGGGGGTCTACGCCATCAGTGGTTACCAGAACAGCGCCGAGAATACCACCACCTACAACGGGAAGACCCACGTGATCTTCCAGAACGCTTACCGCAACACCGTCCACGAGTTCTGGGCGATGTCGCTTGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
79a996657fbb718ef2771fd9792ec939ff334709e1bdb7eb8b2db3f65e697107
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6786
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50