Protein

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Genbank accession
USM11579.1 [GenBank]
Protein name
putative tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,52
Protein sequence
MGQLVTTVAGGFAGFLIGGPLGAQIGMTLGGMVGATLFGPTIKGPRLNDLKVSASTYGVAIPEVWGTVRVGGNMIWTTGIKETKKTSRQGKGGPKQTTYTYDATFAVGLCKGPISDVLRIWADGKLIYDKTNGASRNPASAGNSAVFEAVQTVLTGSTKKAKLNFRVYRGGEDQLPDSLIEADKGVGNVSAHRGLAYVVFEKLQLEDFGNRIPQLTFEVSRQRSNSYPSIVVTNSDGSGTIPNVTARAWYPDWETGKLLSIRSDRADILDLNTMKSLLYRDIDLRSNYRMKYVAGANQWLTVPSGRNSAPIEVWNTLSLTRVVSWGETSNSLTGFINSDGTYHLGNAGPLGYGRFGGGGRLYIASNMRGRTYGIIGGAAVFNVATPFTPWTYLEGIIDGASPDIIGYRAVSGQLQLSFCSIAGFTGTALLRPFDGEDLSLGGALYDRTDNCVFGWGVSGGQTCFFKWNRSTGAYKFRVKHPGLPRPMSIMEYSRLGGGTFGYGYAGFQQTSRLIEIDLQNGSIVTNQTFTESAFGNSLSFGDGQQWDDNTKSLIVETAGAFRRVFFGAGVTKLSVATVVRDVCLYSNLLTEADIDMTGLNADELVGYMIDRETTGRDVLKQLATGFLFDGFESDDKLKFKSRGSAPVVTIPENWIGRNSDGIVVRETLRQELEMPVRITVNFYDTTRDHQQGSQHDKRKSNPYPTMFSAKEEIIELPISWLPDDAKRCAQKILKMTWANRTDYAMDLPWRYLKYDPTDVVKVTLDDGTVHTIRLGEVTIGADFAIEATGVSEVAAAYVSTAKGATSEAPVQVIDLGLPAYPIVINTPLLRDIDYDTTGNASCYITANSENTFTSAAVYMDDGYEFINVAVIVNAPTQGVVINKLPDTKAYESTDEETVLEVRLLNDDDELEAVTQDDMLTKFVNGALIGGEVIQFRDAEQREDGIWLLSGILRARRGTNYAVTGHAVGETFVLLNDENISRFQRPPADYSVTREFRAVTSGGLLEDANGVTVTLSPRDLAPYTPEDVKITDDGTTVTITMSRRSRITAPLADGTGTIHYKEGDKTSAKIAYNVWKGLGLANATTQATPTVSGNIPLFDVNGDELPTTFTFPLDALEGNPQFLLRLAEIGVVEGTPKIIEFERLGQDRWNAVDLY
Physico‐chemical
properties
protein length:1154 AA
molecular weight: 125607,91740 Da
isoelectric point:5,11542
aromaticity:0,09359
hydropathy:-0,19575

Domains

Domains [InterPro]
DC_1879
ATT
1–297
DC_1879 DC_1657 IPR056490
IPR032876
ATT
610–777
IPR032876
DC_1311
RBD
767–1136
DC_1311
USM11579.1
1 1154
Architecture
ATT
STR
ATT
STR
RBD
ATT 1-297 | STR 544-609 | ATT 610-777 | STR 778-804 | RBD 805-1136 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
USM11579.1
1 1154
Domain Start End Length (AA) Confidence
N-terminal 1 294 294 0,7052
Central domain 295 502 209 0,6703
C-terminal 503 1154 651 0,0598
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-294
Central
295-502
C-terminal
503-1154

Taxonomy

  Name Taxonomy ID Lineage
Phage Citromicrobium phage vB_CbaS-RXM
[NCBI] 		2909582 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citromicrobium bathyomarinum
[NCBI] 		72174 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Sphingomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USM11579.1 [NCBI]
Genbank nucleotide accession
OL963731 [NCBI]
CDS location
range 80581 -> 84045
strand -
CDS
ATGGGTCAACTCGTCACGACCGTTGCCGGTGGCTTCGCTGGCTTCCTGATCGGTGGCCCCCTCGGCGCACAGATCGGCATGACGCTCGGCGGCATGGTCGGCGCGACCCTCTTTGGGCCGACGATCAAGGGGCCGCGCCTCAACGATCTCAAGGTCTCTGCCTCCACTTATGGCGTCGCGATCCCGGAGGTGTGGGGCACCGTCCGCGTGGGCGGGAACATGATCTGGACGACCGGGATCAAGGAGACGAAGAAGACCTCCCGGCAGGGCAAGGGTGGTCCCAAGCAGACCACCTACACCTATGACGCGACCTTCGCGGTGGGCCTGTGCAAGGGACCGATCAGCGATGTCCTCCGCATTTGGGCGGACGGCAAGCTGATCTACGACAAGACGAACGGCGCGTCCCGGAACCCGGCATCCGCTGGCAACTCGGCGGTGTTCGAGGCCGTGCAAACCGTCCTGACCGGATCGACCAAGAAGGCCAAGCTCAACTTCCGCGTCTATCGCGGCGGCGAGGACCAGCTTCCCGACAGCCTGATCGAGGCGGACAAGGGCGTCGGCAATGTCTCGGCTCACCGGGGTCTCGCCTATGTGGTGTTCGAGAAGCTCCAACTCGAAGACTTCGGCAACCGCATCCCGCAGCTTACCTTCGAGGTCAGCCGCCAGCGTTCGAACTCCTATCCTTCGATTGTCGTCACCAACAGCGACGGCTCGGGCACGATCCCGAACGTGACGGCCCGCGCTTGGTATCCGGATTGGGAGACCGGCAAGCTCCTCTCGATCCGCAGCGACCGGGCGGACATCCTCGACCTCAACACCATGAAGTCGCTCCTCTACCGGGACATCGATCTCCGGTCGAACTACCGGATGAAGTATGTCGCCGGGGCGAACCAGTGGTTGACCGTTCCGAGCGGACGCAACAGCGCGCCCATCGAAGTCTGGAATACCCTCTCCCTGACCCGCGTTGTGTCGTGGGGCGAAACCAGCAACAGCCTGACCGGGTTCATCAATTCCGATGGCACCTACCACCTCGGCAACGCTGGTCCTCTTGGCTATGGTCGCTTCGGCGGCGGCGGGCGTCTCTACATCGCTTCGAACATGCGGGGCCGAACCTACGGCATCATCGGCGGCGCGGCGGTCTTCAACGTCGCCACGCCCTTCACGCCGTGGACCTACCTCGAAGGGATCATCGACGGAGCTTCCCCGGACATCATCGGCTACCGCGCCGTCAGCGGCCAGTTGCAGTTGAGCTTCTGCAGCATCGCCGGTTTCACCGGCACGGCCCTGTTGCGTCCCTTCGACGGCGAAGACCTGTCCCTCGGCGGCGCGCTCTACGACCGCACCGACAACTGCGTCTTCGGCTGGGGCGTCTCGGGCGGGCAGACCTGCTTCTTCAAGTGGAACCGCTCGACCGGCGCATACAAGTTCCGGGTCAAGCATCCCGGCCTGCCCCGGCCCATGTCGATCATGGAATACTCGCGCCTCGGCGGCGGGACCTTCGGCTACGGCTACGCAGGATTCCAGCAGACTTCGCGCCTGATCGAGATCGATCTGCAGAACGGCTCCATCGTCACCAACCAGACCTTCACGGAGAGCGCCTTCGGGAACTCGTTGTCGTTCGGCGACGGCCAGCAGTGGGACGACAACACCAAGAGCCTGATCGTCGAGACGGCGGGCGCGTTCCGCCGCGTCTTCTTCGGGGCCGGGGTTACGAAGCTCTCGGTCGCGACCGTGGTCCGCGATGTCTGCCTGTATTCGAACCTCCTGACCGAAGCCGACATCGACATGACCGGCCTCAACGCCGACGAACTGGTCGGCTACATGATCGACCGCGAGACGACCGGTCGCGATGTCCTCAAGCAGTTGGCGACCGGTTTCCTTTTCGATGGGTTCGAGAGCGACGACAAGCTCAAGTTCAAGAGCCGTGGCAGCGCCCCGGTGGTCACGATCCCGGAGAACTGGATAGGGCGCAACAGCGACGGGATCGTGGTCCGCGAGACCCTGCGTCAAGAACTCGAAATGCCTGTCCGGATCACGGTCAACTTCTACGACACGACCCGCGATCACCAGCAGGGATCGCAGCACGACAAGCGCAAGTCCAACCCCTACCCGACGATGTTCTCGGCGAAGGAAGAGATCATCGAACTGCCGATCTCTTGGCTACCCGATGACGCGAAGCGGTGCGCTCAAAAAATCCTCAAGATGACTTGGGCGAACCGGACCGACTACGCGATGGACCTGCCGTGGCGCTACCTCAAGTATGACCCGACCGATGTCGTGAAGGTCACGCTGGACGATGGCACGGTCCACACGATCCGTCTCGGCGAGGTAACCATCGGCGCGGACTTCGCAATCGAGGCGACCGGCGTAAGCGAGGTCGCAGCAGCCTACGTCTCGACCGCCAAGGGCGCGACCTCCGAAGCGCCCGTGCAGGTGATCGATCTCGGTCTCCCGGCATACCCGATTGTCATCAACACGCCACTGCTTCGCGACATCGACTACGACACCACCGGCAACGCCTCCTGCTACATCACCGCGAACTCGGAGAACACCTTCACGAGCGCGGCGGTCTACATGGACGATGGCTACGAGTTCATCAACGTGGCCGTGATCGTCAACGCGCCGACACAGGGCGTGGTCATCAACAAGCTGCCCGACACGAAAGCCTACGAGTCCACCGACGAAGAAACGGTCCTCGAAGTGCGTCTCCTCAACGACGACGACGAACTGGAAGCGGTCACGCAAGATGACATGCTGACGAAGTTCGTCAACGGCGCGCTCATCGGCGGCGAGGTCATCCAGTTCCGTGACGCCGAGCAGCGAGAGGACGGCATCTGGCTCCTGTCCGGTATCCTGCGGGCGCGACGCGGCACCAACTACGCGGTCACCGGCCACGCGGTCGGCGAGACCTTCGTCCTGCTCAACGACGAGAACATCTCGCGCTTCCAGCGTCCACCAGCCGACTACAGCGTCACCCGCGAGTTCCGTGCGGTGACCAGCGGCGGACTGCTCGAAGATGCGAACGGTGTGACCGTCACGCTGTCGCCCCGCGACCTTGCGCCCTACACGCCCGAGGATGTGAAGATCACCGACGATGGCACGACCGTGACGATCACAATGTCGCGCCGCAGCCGCATCACCGCGCCGCTGGCCGATGGCACCGGGACGATCCACTACAAGGAAGGCGACAAGACCAGCGCGAAGATCGCCTACAACGTGTGGAAGGGTCTCGGCCTCGCCAACGCCACCACGCAGGCGACGCCGACCGTCTCGGGCAACATCCCGCTCTTCGATGTCAACGGGGATGAACTCCCGACGACCTTCACCTTCCCGCTCGACGCGCTCGAAGGCAATCCGCAGTTCCTCCTGCGACTGGCCGAGATCGGCGTGGTCGAGGGGACGCCGAAGATCATCGAGTTCGAACGCCTCGGCCAAGACCGCTGGAATGCCGTCGATCTTTATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1719ab459c5a1c6c4a3b8ed61ecb80c98652818a15236c9b4e5f441991db6843
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2902
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50