Protein

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Genbank accession
AFC22012.1 [GenBank]
Protein name
putative structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,67
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MTVEIAGFVSELNTSWPLSGDLIKEGDDHIRLIKTTLTNTFSSFNKKLTISADTMNLLDANLKFDSDSVSCNKTFLMSGTSKTINFNKDGITTNKNVVTGVPLPRAGDAGLDDAVSRRYLERNGGMVASWPVGSIYISATATNPADLFGFGTWQQFAPGRVLVGYGVGNDGTDSINYNTVLAQGGKYYHTLTSGEMPAHSHPHDIGGRALSNGAHYHRFMGDDGLEAFNFKESYINYDARSHGGNGGIYRTTTDGAHEHSLQITGGVQTTGGNQKHNNIQPYIVVYMFRRTA
Physico‐chemical
properties
protein length:292 AA
molecular weight: 31644,75200 Da
isoelectric point:6,39924
aromaticity:0,09589
hydropathy:-0,39144

Domains

Domains [InterPro]
DC_0033
STR
4–292
DC_0033
SSF88874
STR
126–288
SSF88874
IPR053827
ATT
129–291
IPR053827
AFC22012.1
1 292
Architecture
STR
ATT
STR 4-128 | ATT 129-292
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFC22012.1
1 292
Domain Start End Length (AA) Confidence
N-terminal 1 33 33 0,7598
Central domain 34 232 200 0,1570
C-terminal 233 292 59 0,9987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-33
Central
34-232
C-terminal
233-292

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage vB_CsaP_GAP52
[NCBI] 		1141137 Uroviricota > Caudoviricetes > Grimontviridae > Crifsvirus GAP52 >
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFC22012.1 [NCBI]
Genbank nucleotide accession
JN882286 [NCBI]
CDS location
range 17168 -> 18046
strand +
CDS
ATGACAGTAGAGATTGCTGGATTTGTCAGCGAACTTAATACCTCTTGGCCTTTGAGTGGTGACTTAATCAAAGAGGGTGACGACCATATTCGTCTTATCAAAACCACTTTGACAAACACTTTCTCAAGTTTCAATAAGAAACTGACGATTAGTGCTGACACTATGAACTTACTTGATGCCAACTTGAAGTTCGACTCTGACTCTGTTAGTTGTAATAAAACCTTCCTAATGTCTGGTACTTCTAAGACTATCAACTTCAACAAAGATGGTATTACCACAAATAAGAACGTTGTAACTGGTGTTCCACTCCCTCGTGCTGGTGATGCCGGTTTGGATGATGCTGTATCTCGTCGTTATCTGGAACGTAATGGTGGTATGGTTGCTTCTTGGCCTGTAGGCTCTATCTACATTTCAGCGACTGCAACAAACCCAGCCGATTTATTTGGTTTTGGTACTTGGCAGCAGTTTGCTCCGGGTCGTGTACTTGTTGGTTATGGTGTTGGCAACGATGGTACAGACTCAATCAACTATAACACTGTTCTGGCACAAGGTGGTAAATATTATCATACACTAACCAGTGGTGAAATGCCTGCACACTCACATCCACATGATATTGGTGGTCGAGCACTCTCGAATGGTGCCCACTATCACAGGTTCATGGGTGATGATGGCTTGGAAGCATTTAATTTCAAAGAGAGCTACATTAACTATGATGCTCGTTCTCATGGTGGTAATGGTGGTATCTATCGTACTACTACTGATGGTGCTCACGAACACTCACTCCAGATTACTGGTGGTGTACAAACCACGGGTGGTAACCAGAAACATAATAACATTCAACCATACATTGTGGTTTATATGTTCCGTCGTACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ade8fbf5d3c402621058e6a25bb96880fd2cde9dd48ee5e4368a674c5d918b58
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6772
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50