Protein

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Genbank accession
QBX06340.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARYVNGQRGQMYPQTWRKELITFQDFSGGMNSETSNENLLDKELVHLVNVDLDERGSLSKRHGFVQRIFGISGKSQGHFYYHKSDSDYVEEVMAINGKLYRVDHRELVEIKIDGLESFQSEREVEGVEYMGALYIATGSGLVEYSGGEKAKLIEPYVPNTLEFLYLGGNLLFDDPNSVLRQTDGQALKIDYIVPTPRKPVTGETVKFVVYYTASPENRNKEWFRFFWKYKGAPDNTLQVFRDWKTGAGANEVTTWFGLTGDLEIVVQAAYTVSPDVPPNDILEEARIPKFTVTAVKEDDESVKTTIKNCNKIIVHHERLLLYGDTVNKNLVYMSYIQNPAYFPSYTTIQFENLYNEPLLKLIQYRDVLLAFSENTIQCLTGSSAADFKRSMVNTSLGCIAPNTVTIVGNHVAFLSADGVYVLKSLNFSEARMNVEKIDAQIKSLIPRDSSACALYNDGQYHLCYPNLGIRFRYYTIFGTWTMDKSDALRFVKMFVHEEKVNGLNAELGSVLEEVPGIYTDVSQNYEMLIETKMYDFGAPYNTKKLKRLNIMFGTSEQKSEANLKVYADHRIIAGDEKEEVYVNDQHQVDIKVIPSQNMTFNAGTILGEWEMGSSAFGTVPTDIFKLRISGKCYRSKIVITSKDSSPFQVLGLSYIFKLGKVK
Physico‐chemical
properties
protein length:663 AA
molecular weight: 75229,57320 Da
isoelectric point:5,70831
aromaticity:0,11463
hydropathy:-0,30483

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX06340.1
1 663
Domain Start End Length (AA) Confidence
N-terminal 1 160 160 0,9861
Central domain 161 359 200 0,1383
C-terminal 360 663 303 0,3418
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-160
Central
161-359
C-terminal
360-663

Taxonomy

  Name Taxonomy ID Lineage
Phage Paenibacillus phage vB_PlaP_API480
[NCBI] 		2530020 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX06340.1 [NCBI]
Genbank nucleotide accession
MK533143 [NCBI]
CDS location
range 7161 -> 9152
strand +
CDS
ATGGCACGGTATGTAAATGGTCAAAGAGGGCAAATGTATCCGCAAACCTGGCGGAAAGAACTTATTACATTCCAGGATTTCAGTGGTGGTATGAATAGTGAAACATCGAATGAAAATCTCTTAGATAAAGAGCTTGTACATTTGGTTAATGTTGACCTTGATGAACGGGGTTCTTTATCGAAACGCCACGGTTTCGTACAGAGAATCTTTGGTATATCAGGAAAATCTCAAGGTCATTTCTACTACCATAAATCTGATTCTGATTACGTTGAAGAAGTTATGGCTATAAATGGGAAACTATACCGCGTGGATCATAGAGAGCTTGTAGAAATAAAAATAGATGGATTAGAAAGCTTCCAGTCAGAACGTGAGGTTGAGGGCGTTGAATATATGGGAGCGCTATATATCGCTACTGGATCGGGTCTTGTAGAGTATAGCGGCGGTGAAAAAGCTAAGCTGATCGAACCTTATGTTCCTAATACACTTGAGTTCTTGTATCTGGGGGGTAACCTACTATTTGATGACCCAAACTCCGTATTGCGCCAGACGGACGGACAGGCTTTAAAAATTGACTATATTGTTCCAACACCACGTAAACCTGTTACAGGAGAAACGGTTAAGTTCGTTGTATATTACACAGCTAGTCCAGAAAATAGGAACAAAGAATGGTTTCGTTTTTTTTGGAAATATAAAGGTGCGCCAGATAATACTCTACAGGTTTTTAGGGACTGGAAAACTGGTGCAGGAGCCAATGAAGTTACTACATGGTTTGGTCTTACTGGTGATCTGGAAATAGTCGTTCAGGCTGCTTATACCGTTAGCCCAGATGTGCCACCAAATGATATTTTGGAAGAAGCACGGATTCCTAAGTTTACAGTTACTGCTGTGAAAGAAGATGACGAATCAGTTAAAACAACAATAAAAAATTGCAATAAAATTATAGTTCATCATGAGAGATTGCTACTTTATGGAGACACGGTGAACAAAAACCTCGTATACATGTCCTATATCCAAAATCCTGCTTATTTTCCAAGTTACACCACTATACAGTTTGAAAACTTGTATAACGAACCCCTGTTGAAACTTATACAGTACCGAGATGTATTGCTTGCGTTTTCTGAAAACACAATCCAATGCCTCACAGGAAGTAGTGCAGCGGATTTTAAGCGCTCAATGGTAAATACAAGTCTAGGGTGCATAGCTCCAAATACTGTAACCATCGTAGGGAACCATGTAGCCTTTCTATCAGCAGACGGGGTATATGTGCTTAAGTCTCTTAATTTCTCCGAAGCGCGAATGAATGTTGAAAAAATTGATGCCCAGATAAAATCACTCATACCAAGGGATTCAAGCGCATGTGCGTTATATAATGATGGGCAATACCATCTATGTTACCCAAACCTTGGAATTAGATTCCGATACTACACAATTTTCGGAACATGGACTATGGATAAATCTGATGCACTTCGTTTCGTAAAAATGTTTGTCCATGAAGAAAAGGTGAATGGCCTGAATGCGGAATTAGGTAGTGTCCTGGAAGAAGTACCCGGTATTTACACCGATGTTTCCCAAAATTACGAAATGCTTATCGAAACCAAAATGTATGATTTCGGGGCACCGTATAACACTAAGAAGCTTAAACGCCTGAACATAATGTTCGGAACATCGGAGCAGAAATCTGAGGCAAACCTAAAGGTCTATGCAGACCATAGGATTATAGCAGGGGACGAAAAAGAAGAGGTTTATGTAAATGATCAGCACCAAGTAGACATAAAGGTTATCCCTTCGCAGAATATGACATTTAATGCTGGGACTATTCTAGGCGAATGGGAAATGGGTAGCAGCGCCTTTGGTACAGTCCCTACAGACATTTTTAAACTTCGCATTTCAGGAAAGTGTTACCGATCAAAGATAGTCATAACGTCCAAAGATAGCAGCCCATTTCAGGTTCTTGGGCTTTCATATATATTCAAACTTGGAAAAGTGAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4b0a6e78f263300abec7b943aff4d9d82144cb8c6aa94ef4f29ca4a087c9931c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8130
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a new podovirus infecting Paenibacillus larvae Ribeiro,H.G., Melo,L.D.R., Oliveira,H., Azeredo,J. and Oliveira,A. 2019 31889094 GenBank