Protein

View in Explore

Genbank accession

XPK42172.1 [GenBank]

Protein name

tail spike protein

RBP type

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,82

TSP

Evidence RBPdetect2

Probability 0,95

Protein sequence

MKRRTLLKSLLGLTSLLPVKFAASQNLQGKSIMSDITPNVVVSMPSQLFTMARSFKAVANGKIYIGKIDADPVNTENQIQVYVENEDGSHVPVSQPIIINAAGYPVYNGQIAKFVTVQGHSMAVYDAYGAQQFYFPNVLKYDPDQALPAFKADLTGPDGADLVGYGDSTVEAELDILTTSNGWYVTPDQFGAKGDGTTDDTAAISAAIAECASTGKTLLLLNKRYVWNGPTISTDKISVMGVRRPSPDATLSKLENGSIIVGTMIFSGTRVQVQNFGVDHGSATFTSGGDALVLSATEKNGLFGIIRNCVGLGRNSSDAYHAILCEGYKYSTVRDIIGCQNLYGYAQKCNYSVSSGVVVKNNQNGIIIKSDSVFGDGSQSILSDVVIDGNGLTSIGVWVFSLDAQLQKVNISNVTSSGCSYDIVVQAAENVINEININNVAASSSRIASICLAGTAVDKIYTANISNVAIGEAAGMLIDAQTCNFLNLTNVTGRITNESTHANDSINIGALVGSSNISNVFPTINYSQDVLAGITYLNNYKNNTLTNYKANVFGVGAPKPGYDTQNIDTNVGSVYLRSSATNSSFLRLTPLSNSSITTLNITTQAGGVISPGYTWWLQNASPSFTLSIVPSSGGHIVTSGNSTKVLSGGDKIGFMFDGATWIQI

Physico‐chemical properties

protein length:	664 AA
molecular weight:	70242,14960 Da
isoelectric point:	5,35255
aromaticity:	0,07982
hydropathy:	0,03584

Domains

Domains [InterPro]

IPR009093
ATT
33–145

IPR009093 IPR011050 DC_0524

IPR036730
ATT
34–141

IPR036730 IPR012334

G3DSA:2.170.14.10:FF:000001
Unmapped
34–142

G3DSA:2.170.14.10:FF:000001 IPR024535

IPR036730
ATT
39–141

IPR036730

IPR009093
ATT
45–135

IPR009093

DC_0269
STR
109–490

DC_0269

XPK42172.1

1 664

Architecture

ATT

STR

RBD

ATT 33-145 | STR 146-610 | RBD 611-664

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR009093	ATT	DC_0597	33	145	InterPro cluster	Bacteriophage P22 tailspike, N-terminal	N-terminal	Medium	Text match	110 proteins / 110 hits
IPR036730	ATT	IPR036730	34	141	Merged direct domain	Phage P22 tailspike-like, N-terminal domain superfamily	N-terminal	Low	Positional only	43 proteins / 43 hits
G3DSA:2.170.14.10:FF:000001	Unmapped	-	34	142	FunFam	Tail spike protein	-	-	-	-
IPR036730	ATT	IPR036730	39	141	Merged direct domain	Phage P22 tailspike-like, N-terminal domain superfamily	N-terminal	Low	Positional only	43 proteins / 43 hits
IPR009093	ATT	DC_0597	45	135	InterPro cluster	Bacteriophage P22 tailspike, N-terminal	N-terminal	Medium	Text match	110 proteins / 110 hits
DC_0269	STR	DC_0269	109	490	Novel HMM	DC_0269	Central	Low	Positional only	3 proteins / 3 hits
IPR012334	STR	IPR012334	142	610	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	178	472	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR024535	ENZ	DC_0410	189	440	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits
DC_0524	RBD	DC_0524	520	664	Novel HMM	DC_0524	C-terminal	Low	Positional only	15 proteins / 15 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XPK42172.1

1 664

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	200	200	0,9870
Central domain	201	564	365	0,9854
C-terminal	565	664	99	0,9673

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-200

Central
201-564

C-terminal
565-664

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage Louie [NCBI]	3391566	Viruses >
Host	Escherichia coli [NCBI]	562	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

XPK42172.1 [NCBI]

Genbank nucleotide accession

PQ850616.1 [NCBI]

CDS location

range 14763 -> 16757
strand +

CDS

ATGAAAAGAAGAACTCTTCTAAAGTCTTTGCTCGGCCTGACGTCACTCTTACCAGTTAAGTTTGCAGCATCTCAAAACCTGCAAGGTAAAAGTATAATGTCAGACATTACACCCAATGTTGTAGTGAGTATGCCTTCGCAACTCTTCACTATGGCTCGTTCTTTTAAAGCCGTAGCTAATGGAAAGATTTATATCGGGAAAATTGACGCTGACCCGGTAAACACTGAAAACCAGATTCAGGTTTATGTAGAGAACGAAGATGGTTCTCACGTTCCTGTTTCGCAACCAATCATCATTAACGCTGCTGGATATCCGGTATATAACGGACAGATTGCTAAATTCGTTACCGTGCAAGGCCATTCTATGGCTGTTTATGATGCCTATGGTGCTCAGCAATTCTATTTCCCAAACGTGCTGAAGTATGACCCGGACCAGGCATTGCCAGCATTTAAGGCTGATTTGACTGGTCCTGATGGTGCTGACCTTGTTGGTTATGGAGATTCCACTGTCGAGGCAGAGTTAGACATCCTGACTACATCTAATGGGTGGTACGTAACTCCTGATCAGTTCGGCGCGAAGGGTGATGGCACTACCGATGACACAGCGGCGATTAGTGCGGCAATTGCTGAGTGTGCTTCTACAGGGAAAACATTGCTCCTGCTTAATAAACGCTATGTGTGGAATGGGCCAACCATATCCACCGATAAAATATCCGTTATGGGCGTCCGTCGCCCAAGCCCTGACGCGACGCTATCCAAGCTGGAAAACGGCAGCATCATTGTCGGTACCATGATATTTTCCGGAACTCGTGTTCAGGTGCAAAACTTTGGTGTAGACCACGGTTCAGCCACATTCACTTCTGGTGGTGATGCGCTAGTGCTTTCCGCAACTGAAAAGAATGGGCTGTTTGGTATCATCCGGAACTGTGTAGGTCTTGGAAGAAACTCATCTGACGCTTACCATGCAATTCTCTGTGAGGGTTACAAATACTCAACGGTGAGAGATATCATTGGCTGCCAGAACTTATATGGCTATGCACAGAAATGTAATTATTCCGTATCAAGCGGTGTTGTAGTAAAAAACAACCAAAACGGAATAATCATCAAATCAGACAGTGTATTTGGCGATGGAAGCCAATCAATTCTTAGTGATGTTGTTATTGATGGTAATGGATTAACATCTATTGGCGTCTGGGTTTTCTCGCTGGATGCACAACTTCAAAAAGTAAACATAAGTAACGTGACCTCGTCTGGTTGCTCTTATGATATCGTAGTGCAGGCTGCTGAGAACGTCATTAATGAAATTAATATTAATAACGTAGCTGCGAGTTCATCACGCATTGCATCAATCTGCCTGGCTGGAACTGCAGTTGATAAAATTTACACAGCCAATATCAGCAATGTTGCTATAGGTGAAGCAGCGGGAATGCTAATAGATGCCCAGACATGTAACTTCCTTAACCTGACAAACGTAACTGGACGAATAACAAACGAATCAACGCATGCTAACGACTCAATAAACATTGGAGCATTAGTAGGAAGCTCTAACATCAGCAACGTGTTCCCTACCATCAACTACAGTCAGGATGTACTTGCTGGCATTACCTATCTTAATAACTATAAAAACAACACGCTTACCAATTATAAGGCGAACGTGTTTGGTGTTGGGGCTCCGAAACCAGGTTACGACACGCAAAACATTGATACCAATGTCGGAAGCGTGTACCTGAGGAGCAGTGCAACTAACTCTTCATTCCTGAGGTTAACGCCACTTAGTAACTCATCCATTACGACGCTTAACATCACCACTCAAGCAGGTGGAGTGATAAGCCCGGGTTACACATGGTGGTTACAAAACGCATCACCATCATTCACGCTGTCTATAGTTCCATCATCAGGAGGTCACATCGTCACTTCAGGCAACTCTACCAAGGTGCTTAGCGGTGGAGACAAGATAGGATTCATGTTCGACGGAGCGACATGGATTCAGATTTGA

Genome Context

Tertiary structure

PDB ID

c1b29b6302301a54f64380c346dfce0c5d14839fb1360bf0cec06d0d987efd50

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7695

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie	Maffei,E., Willi,L. and Harms,A.	—	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature