Protein

View in Explore
Genbank accession
BBD74680.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,53
Protein sequence
MAFDGAIKSLMQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLSTLPITANFNNRVFATYVDVADATNHVLVNTEDGQLVVLSEDFGTVLHNGTYPYLQASNANAIQTGTLRGDLYLANTQQAPTLVHGTTTQQDPTKTGFFFVRVPAFSKDYDITLSNSTGTYTYTHRTPNGQGSGDADLAKPSYVVSQLVTLINAETGTHGITAHAFDAYMYLVSATATLSATTNAGSTYATASNQSRVTLLSDLPARLPTVADGVLCAVGTTPRSFTWYEYESSTSVWKEVGAYGSPTGFSGMPIKLSLDGTYTVSTPEYEGRLAGSDITNEDPGFIEHGLTGFGVYQGRLVILAGPEVCMSASGMSERWYRSTVTSLLTDDPINVFSGAATTTNFSHCVQFNKDLLLFSRSCQAVVPSSNAAITPQTAQIVITSQYTTDTLAAPTVVGRSVLYPMPRTESFAGILEMIPSNTTDSQYTSNDVTAHIPRYMPGSIRSITASTTSNSSVLLCTGDDRSVFIQDYLWSGDEKVQSAWHQWSVPYPIVCAWFVRDRVYLGMRDGNTIVVGTVEPQAGTTYLSYTRPFSDLYSLVTVTDGVTTFPVQLRNAYLSGVEPFLTFADTSKGGMWVGIESIDTTTWEVRTVRNVPSGQYFLGLRYMSVLSPTPPLVRDANGVVIGTSRTLLVRYELTVKDSGEFHAAISDSSRVLADGTYSSLVYSNVELLPNEPTSASLGRVVVPVRAQAQETVATFESDADTDLCILDIEYILQYRARRKRL
Physico‐chemical
properties
protein length:776 AA
molecular weight: 84301,35630 Da
isoelectric point:5,16362
aromaticity:0,09407
hydropathy:-0,10451

Domains

Domains [InterPro]
DC_0058
STR
1–776
DC_0058
IPR058003
TTP
5–775
IPR058003
BBD74680.1
1 776
Architecture
STR
STR 1-776
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BBD74680.1
1 776
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,9895
Central domain 138 339 203 0,1381
C-terminal 340 776 436 0,1719
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-339
C-terminal
340-776

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PPWS2
[NCBI] 		2153295 Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Kotilavirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BBD74680.1 [NCBI]
Genbank nucleotide accession
LC375533 [NCBI]
CDS location
range 28591 -> 30921
strand +
CDS
ATGGCGTTCGATGGCGCGATTAAGAGCTTAATGCAGGGCGTGTCTCAGCAGGTTCCGCGTGAACGTCTGGACGGACAAGTCTCTGTTCAACTGAACCGTTTGTCTGATGTGGTGAACGGGAACCGGCGTAGGCCGGGTGCTCGGTATCTGAGTACCCTACCAATCACAGCCAATTTCAATAACCGTGTGTTTGCTACGTACGTCGATGTGGCGGACGCTACCAACCACGTACTAGTGAACACAGAGGATGGGCAGCTGGTGGTTCTCTCAGAGGACTTCGGTACCGTACTGCATAACGGTACGTACCCGTATCTGCAAGCCAGTAATGCCAACGCTATCCAAACAGGTACGCTTCGCGGCGACCTGTACTTAGCCAACACCCAACAGGCTCCTACACTGGTGCATGGTACGACGACGCAACAGGACCCCACTAAGACTGGGTTCTTCTTTGTGCGGGTACCTGCATTCAGTAAAGATTATGACATTACGTTATCAAACAGTACAGGTACGTACACGTACACCCACCGGACGCCTAATGGGCAGGGTAGTGGGGATGCTGACTTAGCAAAACCGTCGTACGTTGTCAGTCAACTGGTAACCCTCATTAATGCAGAAACCGGTACACACGGCATTACGGCACACGCCTTTGATGCGTACATGTACTTGGTGAGTGCTACTGCTACGTTATCGGCGACGACTAACGCAGGCTCCACTTACGCTACGGCAAGTAACCAGTCACGGGTGACACTGCTCTCTGACTTACCGGCACGTTTACCTACCGTTGCGGATGGTGTATTATGTGCGGTAGGTACAACGCCACGTTCCTTTACGTGGTACGAGTACGAGTCAAGCACGTCCGTCTGGAAAGAGGTCGGTGCTTACGGAAGCCCTACAGGCTTTTCAGGTATGCCCATCAAGTTGTCACTGGATGGGACGTACACCGTCAGTACGCCTGAGTACGAAGGTCGCTTAGCCGGTTCGGATATCACGAATGAAGACCCCGGTTTTATTGAGCACGGTTTAACAGGTTTCGGTGTATATCAAGGCCGCTTGGTTATCTTGGCAGGGCCAGAGGTTTGTATGAGTGCTTCCGGTATGTCGGAGCGCTGGTACCGTAGTACGGTTACCTCTTTACTTACCGATGACCCTATCAACGTGTTCTCTGGTGCCGCTACCACCACTAACTTTAGCCACTGCGTACAGTTCAACAAAGACCTGCTGTTGTTCTCCCGTTCATGTCAGGCTGTTGTGCCTAGTAGCAACGCTGCTATTACACCACAGACTGCACAGATTGTTATCACGTCACAGTACACGACGGATACGCTTGCGGCACCTACGGTAGTGGGACGCTCTGTGTTGTACCCTATGCCCCGTACTGAATCCTTCGCTGGTATTCTGGAGATGATTCCGAGTAACACGACGGATTCCCAGTACACGTCAAACGATGTGACTGCACATATCCCAAGGTACATGCCCGGAAGTATTCGAAGCATCACCGCTAGCACTACGTCAAACTCCAGTGTGTTACTCTGCACAGGGGATGACCGTTCCGTGTTCATCCAAGACTACTTGTGGTCTGGTGATGAAAAGGTACAGTCTGCGTGGCACCAGTGGAGTGTACCTTATCCTATTGTGTGTGCATGGTTCGTACGGGACCGCGTGTACTTGGGTATGCGTGATGGTAACACCATTGTGGTGGGCACAGTCGAACCGCAGGCAGGTACCACGTACCTATCGTACACCCGCCCGTTCTCAGACCTGTACTCGCTGGTGACCGTGACAGATGGTGTAACAACGTTTCCTGTCCAATTGCGCAATGCGTACTTATCAGGTGTTGAACCCTTCCTGACCTTTGCTGACACCAGTAAAGGTGGTATGTGGGTTGGTATCGAATCCATCGACACCACTACATGGGAGGTCCGTACAGTGCGTAACGTCCCTAGTGGGCAGTACTTCCTTGGGTTACGGTATATGAGTGTACTGTCACCTACGCCGCCGCTGGTACGTGATGCCAACGGTGTCGTTATCGGTACGAGTAGAACGTTGCTAGTCCGGTACGAGTTGACTGTTAAAGACTCAGGTGAGTTCCACGCCGCTATCTCAGATAGTTCCCGTGTTCTCGCCGATGGTACGTACTCCAGTTTGGTTTATTCCAACGTGGAGCTACTGCCTAATGAACCTACAAGTGCGTCATTAGGTCGTGTTGTAGTACCTGTACGAGCACAGGCACAGGAGACTGTGGCTACGTTCGAATCGGATGCCGACACCGACCTATGCATCCTAGACATTGAGTACATCCTACAGTACAGAGCAAGGAGGAAAAGACTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7b426adcd7aa582f908eb1a58c6db09221f89cb4fb55aed228059aa983c43734
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8715
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Podoviridae phage infectious to Pectobacterium Hirata,H. and Kashihara,M. 2009-09 — GenBank