Protein

View in Explore
Genbank accession
QYW06111.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,80
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSFNIKPTRMLGQAVKEPPPEYLVSLYKTAGSTITYGSESNSHFIDVISLGPTGGIIDAYLDETPISSGEFPKSTIFFHDGSGAEKPWVGDFPFVERTISLGKNAEITEVGETNYSVTTFQRKVSSVGVEGIRVNFTSAGITHKDDKGREKTARSKFKVEAIDPNGIVIAVSDGQYKEFASKNPVAVQVYLQAPEGFKNTIWEYRVTMEVMGFNYSTSLSGNWSASTVTELYMDTQTYDNISYSSGTIVASDVSGKIPKRQYLLAGYKVLVPEYQDIGGTQVLTGTFTRAVSDSPAWNAMAVITDTLWGAGQPLDKVDIVSFDEFSKYCKQLVGGDQRYSFSQYLIKSDNYYKLASEMVGSADGRLYEDNSGRIGVLIDKQTSNRRVVTSYDIVDEMVKRTTVAEEKKINYVEAEFEDRDNQYKKTIIKIEDENAITKNGVISKNLKLDTCTKLSEAQRTIKKMLVTSQVATSSYVLKVGHTHEDVQIGEVLEVYDRKFANVNYCGKIAAGSTLNVIQIDARTPINLTGIKQPLFTIDTNRGVPIKIAINSWASNSITLATNLPSIPAEFTSFGVDDADATGIKPTLIRVLGVDDSSGVLSLEGVEYNDSLYSHVENGTPLVVHKYKYIPAQTTVEITGLQLVRTLTGITASWDSSGAGYGYGYNWKFTPVGGTTIYIGSGVTDNLQVSLLKPLGEGTYEIQVLATLNGESVGEYAIDTLYVGVDTGSTLPAPTGLASLLPDGTFSTDFVGRSFTIRWDQVEEVAGVTVSHFKLRVIQGATTYEVIVDKSSRQYRFSEEVLTSQFGSYTRYFTIQLVTVDSELKTAELRQIAIANPVPPLPVVTVNNTGSLTLSYGATLPTDLTGTLLRIWEGTSQFEPIPVDAVSLLSSETLEISLPDDVVKQDGTSYVFDAVWVDSFGSDGTNHGRVVFAFDPNAQIPVSPELYEAVPIDSQTVMVKYTHSGLYLKRIQVSYRRYGTTTWTTLAEVFTVPPVDSDSGYDIITGEGYVKVSGLVRNINYEFKLNVANTVGLYSEDSNYITGTPFLDVLKPSDIPNLDDIILGAELTDPRMLIVEGVSDVFGEGKNSAEIITVKKVVADEKQAQATAITRIEAKVGENTATILETQDALATETLARVVAISELTVKVGANTAGIVNAQQAIVDETNARVSSIQQLTVQVGEDIALVDQSAKAAIGYCSIGGSFSSHETKDLCQAAGGTWTNSTLATSVRTVQVSSGGSTATVGDFYSAYVDLEGNVVGKAVLGVDINGAFTGMEVVGGSTYSQLIFKGNTIKFQSTAGVDQLVYENTTNTWSFKGTIYAENIEGDVTDVDVMLTTGYTWGVGVSSTVNILKFKVNALPFFRKVRVDPIVIQPLSSATNIMSAELRYSATGVGDPLTWPVIDIVLFNQGGSRPTSQPLYGDTYLGVDGYFAVSLHRTQTSGSDSAQHDAQDLAISVFKSGSTLTQL
Physico‐chemical
properties
protein length:1465 AA
molecular weight: 158699,24430 Da
isoelectric point:4,77160
aromaticity:0,09010
hydropathy:-0,09017

Domains

Domains [InterPro]
DC_0016
STR
6–730
DC_0016 DC_0068 DC_1438
IPR053171
Unmapped
38–706
IPR053171 DC_0068
IPR032876
ATT
383–496
IPR032876
QYW06111.1
1 1465
Architecture
STR
ATT
STR
STR
RBD
STR 6-382 | ATT 383-496 | STR 497-730 | STR 972-1335 | RBD 1336-1465
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYW06111.1
1 1465
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,6814
Central domain 171 369 200 0,0119
C-terminal 370 1465 1095 0,1360
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-369
C-terminal
370-1465

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage vB_SspS_KASIA
[NCBI] 		2866686 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYW06111.1 [NCBI]
Genbank nucleotide accession
MZ568826.1 [NCBI]
CDS location
range 29265 -> 33662
strand -
CDS
ATGTCATTTAATATAAAACCCACTAGAATGCTAGGTCAAGCAGTAAAAGAGCCGCCACCAGAATACTTAGTCTCTCTATATAAGACAGCAGGGTCAACCATTACGTATGGAAGTGAAAGTAACTCACATTTTATAGATGTAATATCATTAGGGCCAACAGGTGGGATTATAGATGCGTACCTAGATGAAACACCCATAAGCTCTGGTGAGTTCCCTAAGTCAACTATATTCTTTCATGATGGGTCTGGAGCAGAAAAGCCTTGGGTTGGTGATTTCCCTTTCGTAGAGAGGACAATATCACTAGGTAAGAATGCAGAAATAACTGAAGTAGGTGAAACTAATTATTCAGTAACAACATTCCAGAGAAAGGTATCTAGTGTAGGTGTTGAGGGCATTCGTGTGAATTTCACCTCAGCAGGGATTACCCATAAGGATGATAAGGGAAGAGAAAAAACCGCTAGGTCTAAATTCAAAGTTGAAGCCATAGATCCTAATGGTATAGTCATAGCAGTATCTGACGGTCAATATAAGGAGTTTGCTTCAAAGAACCCAGTAGCTGTGCAGGTGTACTTGCAGGCACCAGAGGGATTTAAGAATACAATCTGGGAGTACAGGGTGACTATGGAAGTGATGGGTTTTAACTATAGTACATCATTGTCAGGGAACTGGTCTGCAAGTACAGTAACTGAGCTATATATGGATACCCAGACTTATGATAACATCTCCTACTCAAGTGGCACAATAGTGGCAAGTGATGTTAGTGGTAAAATACCTAAGAGGCAATACTTACTGGCTGGCTACAAGGTATTAGTTCCAGAATACCAAGATATAGGTGGCACTCAGGTGCTCACAGGTACATTCACAAGAGCTGTGTCAGATAGTCCAGCTTGGAATGCCATGGCAGTAATCACAGATACATTGTGGGGTGCAGGTCAGCCATTAGATAAAGTTGACATTGTTTCATTTGATGAGTTCTCTAAATATTGCAAACAACTAGTAGGGGGAGATCAAAGATATTCCTTTAGTCAATACCTAATAAAATCTGATAACTATTACAAGTTAGCATCAGAAATGGTTGGGTCAGCAGATGGTCGTCTGTATGAAGATAACAGTGGTCGTATTGGTGTATTGATAGACAAGCAGACAAGTAATAGACGAGTTGTGACCTCTTACGATATAGTTGATGAGATGGTTAAAAGAACCACTGTTGCTGAAGAGAAGAAGATTAACTATGTTGAGGCTGAGTTTGAGGATCGTGATAACCAGTACAAGAAGACAATTATCAAGATTGAAGATGAAAACGCTATCACCAAGAATGGTGTCATCTCCAAGAATTTAAAGTTAGACACTTGTACTAAGCTGAGTGAGGCACAGAGAACCATCAAGAAGATGCTTGTAACCTCACAGGTGGCGACATCTTCTTATGTGCTCAAGGTAGGTCACACTCACGAAGATGTGCAGATAGGGGAAGTCCTAGAGGTCTACGACCGCAAGTTTGCTAATGTAAACTATTGTGGCAAGATAGCTGCTGGTTCAACACTGAATGTTATTCAGATAGATGCTCGTACACCAATAAACCTAACTGGTATTAAACAGCCATTATTCACCATTGATACCAACCGTGGTGTGCCAATAAAGATTGCAATTAACTCTTGGGCAAGCAACTCGATCACACTGGCAACAAACCTACCATCAATCCCAGCAGAGTTCACCTCTTTTGGTGTTGATGATGCTGATGCTACTGGAATTAAACCGACACTAATACGTGTGCTTGGTGTGGATGACTCATCAGGTGTATTGTCACTTGAAGGTGTTGAGTATAATGACTCCCTGTACAGTCATGTTGAGAATGGCACTCCGCTGGTAGTTCACAAGTACAAGTATATCCCAGCACAAACAACTGTAGAGATCACAGGTTTACAATTAGTAAGGACACTCACAGGAATTACAGCATCTTGGGACTCATCAGGTGCAGGATATGGATATGGGTACAATTGGAAATTCACTCCAGTTGGTGGTACGACAATATATATTGGAAGTGGGGTAACAGATAACCTACAAGTATCACTCCTTAAACCATTGGGTGAGGGTACATATGAGATTCAAGTATTAGCTACCTTAAATGGTGAGTCTGTTGGTGAATATGCAATTGATACACTGTATGTTGGTGTAGATACTGGTTCAACACTGCCAGCACCAACTGGGTTAGCTTCATTACTTCCAGATGGGACGTTTAGTACAGATTTTGTTGGTAGATCATTCACCATAAGATGGGATCAAGTAGAAGAAGTTGCAGGTGTAACCGTAAGCCACTTCAAACTAAGAGTCATTCAAGGTGCAACAACATATGAAGTAATTGTTGATAAATCAAGTAGGCAATATAGGTTCTCAGAAGAAGTACTAACCTCACAGTTTGGTAGTTACACCCGTTACTTCACAATACAACTAGTCACAGTGGATAGTGAGCTAAAGACTGCTGAGTTACGCCAGATAGCTATAGCCAACCCAGTGCCACCATTGCCAGTGGTCACAGTAAACAACACAGGTAGTTTAACATTATCTTATGGTGCAACACTGCCAACTGATTTGACAGGTACATTGTTAAGGATATGGGAAGGTACATCACAGTTTGAACCCATCCCCGTTGATGCAGTTTCATTGCTGTCATCAGAAACTTTAGAAATATCACTACCTGATGATGTTGTCAAGCAAGATGGTACATCATATGTATTCGATGCAGTGTGGGTTGATTCATTTGGAAGTGATGGAACAAATCACGGAAGGGTTGTATTTGCATTTGACCCTAACGCTCAGATACCTGTATCCCCAGAGTTATATGAAGCAGTTCCAATTGATAGCCAAACAGTGATGGTTAAGTACACCCACAGTGGGTTGTATTTAAAGCGCATACAAGTGAGTTACAGACGTTATGGCACAACAACGTGGACTACTCTAGCTGAAGTGTTTACAGTTCCACCAGTTGATTCTGACAGCGGTTACGACATCATCACAGGAGAAGGTTATGTAAAGGTCTCTGGACTAGTTAGAAACATTAACTACGAGTTCAAATTAAATGTAGCTAACACTGTAGGTCTTTATTCTGAGGATTCTAACTATATCACAGGAACACCTTTCCTAGATGTGTTGAAGCCATCTGATATACCAAACCTTGATGATATAATACTTGGTGCAGAGTTAACTGATCCTCGTATGCTGATAGTCGAAGGTGTATCTGATGTATTTGGTGAAGGCAAGAACAGTGCTGAAATAATCACAGTTAAAAAAGTGGTTGCTGATGAGAAACAGGCACAGGCTACTGCTATCACTAGAATTGAAGCAAAGGTTGGTGAAAATACTGCAACAATCCTTGAGACACAGGATGCACTAGCTACTGAGACATTAGCAAGGGTGGTGGCAATATCTGAGTTAACTGTTAAGGTTGGTGCCAACACTGCTGGTATTGTGAATGCACAACAGGCAATTGTTGATGAGACTAATGCAAGGGTATCCTCAATACAACAATTGACAGTTCAGGTTGGTGAAGATATTGCTTTAGTTGATCAGTCTGCTAAAGCAGCGATTGGCTACTGTTCAATAGGTGGGAGTTTCTCATCTCACGAAACTAAAGACCTTTGCCAAGCAGCGGGTGGTACATGGACTAATAGCACATTAGCCACATCAGTGAGAACAGTTCAGGTTTCATCGGGTGGAAGTACAGCAACAGTTGGGGATTTCTACTCAGCATATGTAGACCTTGAAGGTAATGTGGTTGGTAAGGCTGTCCTCGGTGTGGATATAAATGGTGCCTTTACGGGTATGGAGGTTGTAGGTGGTAGTACATATAGCCAGCTAATCTTCAAAGGTAACACCATAAAGTTTCAAAGCACTGCGGGTGTAGACCAATTGGTTTATGAGAATACAACTAACACTTGGAGTTTCAAAGGCACAATATACGCTGAGAATATAGAAGGTGATGTTACTGACGTTGATGTGATGTTGACTACTGGGTACACATGGGGTGTAGGTGTATCCTCTACAGTTAATATTCTAAAATTCAAGGTTAATGCACTTCCTTTCTTCAGAAAGGTTAGGGTTGATCCTATAGTAATCCAGCCACTGAGCAGCGCAACTAACATTATGTCAGCAGAACTAAGGTACAGTGCTACTGGGGTAGGGGATCCATTGACATGGCCTGTTATTGATATTGTACTGTTCAACCAAGGCGGAAGTAGGCCAACATCACAACCTCTCTACGGAGATACATATCTAGGTGTTGACGGGTACTTTGCAGTATCCCTCCATAGAACACAAACAAGTGGATCAGACTCAGCACAACATGATGCACAAGACCTAGCTATTAGTGTTTTTAAGAGCGGTTCTACATTAACACAACTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
09149be63f5b240e9226961a8e2dfa85d8c9738e9ddd3ef99c88f99d383b9e11
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7057
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification, Characterization, and Genomic Analysis of Novel Shewanella Virulent Phage from a Gold Mine Bujak,K., Decewicz,P. and Radlinska,M. 2020-09-13 — GenBank