Protein

View in Explore
Genbank accession
QGZ17930.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAQIDKPNLFFNTVLYTGNASTRSITGVGFQPDMVWTKSRGNSNNHNIYDVVRGATKRVYPNSTSQEATTSNTLTSFDSDGFSLGDQDNVNANGITMASWSWKAGGSGSANNVGSINSTVSVNTTSGCSIVAYTGNASNATVGHGLGSAPKMILIKGRNQTEDWTVWHDGFGDNDKYGVLNGTVPYYTASTVWNSTAPTSTVFHLGTASRPNTNFGTYIAFCFSEKKGFSKFGRYLGNGNNAGQFVYTGFKPAWLMRKCTVNSTAETWLINDNKRPGYNQNQLALFPSNSNAEDTATHNAVDFCANGFKVRTNDGRTGGNGNTYIYAAFAENPIVGSNNIPATAG
Physico‐chemical
properties
protein length:345 AA
molecular weight: 36922,03030 Da
isoelectric point:8,77636
aromaticity:0,11304
hydropathy:-0,45246

Domains

Domains [InterPro]
IPR055906
STR
6–333
IPR055906
QGZ17930.1
1 345
Architecture
STR
STR 6-333 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ17930.1
1 345
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0064
Central domain 11 209 200 0,0006
C-terminal 210 345 135 0,9994
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-345

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC103P
[NCBI] 		2686458 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ17930.1 [NCBI]
Genbank nucleotide accession
MN698242.1 [NCBI]
CDS location
range 30935 -> 31972
strand -
CDS
ATGGCACAAATAGATAAACCAAATTTATTTTTTAATACTGTTCTTTATACTGGTAATGCTTCTACTAGAAGTATAACTGGAGTAGGATTTCAACCTGATATGGTTTGGACAAAGAGTAGAGGTAATAGTAATAATCATAATATATATGATGTTGTAAGAGGAGCAACAAAAAGAGTTTATCCTAACTCTACTTCTCAAGAAGCAACTACTTCTAATACCCTTACTTCTTTTGATAGTGATGGTTTTAGTTTAGGAGACCAAGATAATGTTAATGCAAATGGTATTACAATGGCATCATGGAGTTGGAAAGCAGGTGGTTCAGGTTCAGCAAATAATGTTGGTAGTATAAATTCTACTGTTTCTGTAAATACAACATCAGGATGTAGTATTGTAGCTTATACTGGTAATGCTTCAAATGCTACTGTAGGTCATGGATTAGGTTCTGCACCAAAAATGATTTTAATAAAAGGTAGAAATCAAACTGAAGATTGGACAGTTTGGCATGATGGTTTTGGAGATAATGATAAGTATGGTGTACTTAATGGAACAGTTCCTTATTATACTGCTAGTACTGTATGGAACAGTACAGCTCCAACATCTACTGTATTTCATTTAGGAACTGCTTCAAGACCAAATACAAATTTTGGAACTTATATTGCTTTTTGTTTTTCAGAAAAAAAAGGTTTTTCTAAATTTGGTAGATATCTTGGTAATGGTAATAATGCTGGTCAATTTGTTTATACAGGATTTAAACCTGCTTGGCTTATGAGAAAATGTACTGTAAATAGTACAGCAGAAACTTGGCTTATAAATGATAATAAAAGACCAGGTTATAATCAAAATCAATTAGCTTTATTTCCAAGTAATTCTAATGCTGAAGATACTGCAACACATAATGCAGTAGATTTTTGTGCTAATGGTTTTAAAGTAAGAACTAATGATGGAAGAACTGGTGGTAATGGTAATACTTATATTTATGCAGCATTTGCAGAAAATCCAATAGTTGGAAGTAATAATATTCCAGCCACAGCAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
42405a314113802ac6dbc947c548e40f462cb72c430cbba5a9ba23bd06846e04
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9152
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank