Protein

View in Explore
Genbank accession
WQZ00196.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 0,94
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSSRADMIGSGPSSGHYQAGPTPTEEKSMPTYINDELLALGGIVNGILEGGAFPPQGKMPVRWREGMMMYFTEPLDDVYNVGQYKGQKIITSAGVWLYRRERWWKIIDDPSSVIGAVFAYRLTADGTPPSTPPPSSYPPSGWEDTAPVKNSKSEWIWISMAAAYDENTDTYTWNQPTPFSAGVEDGIDGQDGSDGADGVRGTITVNKETSGSVWNDTEAYNAILNDPRSGGVVLNLDMVNLYNDSEEFSEQRFYSNGVWESFELFVDGNAIVTGTLIGDKIKSDTKIIIGGNYGQDVVIIDANDNDNRIWVGSSESTSAKFKVSPDGTLSATNANISGEINATSGVMNNITIEENCNVKGTIYAENIVGGITSGIVKNNPSSYVGFTGINTWATIADIVDVNTTTPYERNLRVSVTSGYEYIKIDIRSDETFDNTAARFRLINNTTGNVVWEYSYTWNASLSRTTLANIPSIDAIIPANEPAGTYQLQVSSNRYIDYIRYMQVSSGTSWSNITSSVACYLFRNSGELS
Physico‐chemical
properties
protein length:528 AA
molecular weight: 57640,92930 Da
isoelectric point:4,39783
aromaticity:0,10227
hydropathy:-0,35777

Domains

Domains [InterPro]
DC_1333
STR
49–525
DC_1333
WQZ00196.1
1 528
Architecture
STR
STR 49-525 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WQZ00196.1
1 528
Domain Start End Length (AA) Confidence
N-terminal 1 284 284 0,9764
Central domain 285 483 200 0,2704
C-terminal 484 528 44 0,9900
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-284
Central
285-483
C-terminal
484-528

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_ValC_WD615
[NCBI] 		3110544 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WQZ00196.1 [NCBI]
Genbank nucleotide accession
OR908438.1 [NCBI]
CDS location
range 33972 -> 35558
strand -
CDS
ATGTCAAGTAGAGCAGATATGATTGGTTCAGGCCCAAGCTCAGGTCACTACCAAGCTGGACCGACACCTACGGAAGAGAAGTCAATGCCAACATATATCAATGATGAACTCTTGGCGTTAGGTGGTATTGTTAACGGTATCTTGGAGGGTGGGGCATTCCCACCTCAAGGTAAGATGCCAGTACGTTGGCGTGAGGGTATGATGATGTACTTCACAGAGCCTCTAGACGACGTTTATAATGTAGGTCAATACAAAGGTCAGAAGATTATCACTTCAGCCGGTGTGTGGCTTTACAGACGCGAGAGGTGGTGGAAAATCATTGATGACCCATCAAGTGTTATTGGAGCAGTATTTGCATACCGACTTACTGCTGATGGTACGCCTCCATCAACTCCACCACCATCATCTTATCCTCCAAGTGGTTGGGAAGACACTGCTCCCGTAAAAAACAGTAAATCCGAGTGGATTTGGATTTCGATGGCTGCAGCTTATGACGAGAATACTGACACCTATACATGGAACCAACCAACTCCATTTAGTGCAGGTGTTGAAGATGGCATAGATGGGCAGGATGGCTCTGACGGTGCTGATGGAGTGCGAGGCACTATAACAGTCAATAAAGAGACTTCAGGTAGTGTATGGAACGATACAGAGGCATATAACGCTATACTCAATGACCCTCGTTCTGGTGGTGTCGTATTAAATCTAGATATGGTCAACCTATACAATGATTCAGAGGAGTTTTCAGAACAACGGTTTTACTCAAATGGCGTGTGGGAGTCTTTTGAACTATTTGTAGACGGTAATGCTATTGTAACTGGCACTTTAATTGGCGATAAGATAAAGTCTGACACTAAGATTATTATAGGTGGTAACTATGGGCAAGATGTTGTTATAATAGATGCCAACGACAATGACAATCGTATCTGGGTGGGCAGCTCTGAATCAACATCTGCAAAATTTAAAGTATCCCCTGATGGAACCTTGTCTGCCACTAACGCAAATATATCGGGTGAAATTAATGCCACTAGCGGTGTAATGAACAACATAACTATAGAAGAAAACTGCAATGTAAAAGGTACAATATATGCAGAAAACATAGTAGGTGGCATTACATCAGGAATAGTTAAGAATAATCCATCTAGTTATGTAGGATTTACTGGCATTAATACTTGGGCTACTATAGCTGATATTGTTGATGTAAACACAACTACACCATATGAAAGAAACTTAAGAGTAAGTGTTACCAGCGGGTACGAATATATTAAGATTGATATTCGGTCTGATGAAACCTTTGATAACACTGCGGCAAGGTTTCGTCTTATTAACAATACAACAGGAAACGTGGTGTGGGAATATTCATATACATGGAATGCTTCCTTATCTAGAACTACATTAGCTAACATACCATCTATAGATGCAATCATACCAGCCAATGAGCCAGCAGGTACATATCAACTTCAGGTATCATCTAATAGATATATAGACTATATTAGGTATATGCAAGTAAGTTCGGGTACTTCTTGGTCGAATATAACATCATCTGTGGCCTGCTACCTATTTAGAAACTCAGGAGAATTGTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ce53176b9926dc3fa2c1906c68916424503a013fde6a27280e7d0d521fb406a6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7017
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a novel bacteriophage against Vibrio alginolyticus from coastal waters and its environmental tolerance Dai,L., Wu,J. and Wei,W. 2024 39278102 GenBank