Protein

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Genbank accession
ALM62164.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MATQPTNPIIKIAENDVNLPSTGKPNKNEPSSPIQTIGYDKNQVVTAEELNYILNNISEWQTYFKDFTEELQTEFDSKIQELEDQIEKERVSIGEIIEITGDSTNPSILKGYGTWESFGGGLTTVGVGSHTDDRGENKTWTDGQTEGEYQHVQTESELAQHNHTFSGTTEDNTVATSITQYLTPNGTDTGTAQQQIMXRTRR
Physico‐chemical
properties
protein length:202 AA
molecular weight: 22392,97850 Da
isoelectric point:4,42903
aromaticity:0,06965
hydropathy:-0,87711

Domains

Domains [InterPro]
DC_0413
STR
1–201
DC_0413
Coil
Unmapped
68–88
Coil IPR053827
ALM62164.1
1 202
Architecture
STR
ATT
STR
STR 1-92 | ATT 93-180 | STR 181-201 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage qdvp001
[NCBI] 		1003177 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALM62164.1 [NCBI]
Genbank nucleotide accession
KT932418 [NCBI]
CDS location
range 102820 -> 103428
strand +
CDS
ATGGCAACACAACCAACAAACCCTATCATCAAGATAGCGGAAAATGATGTAAATTTACCTAGTACAGGGAAACCTAACAAGAACGAACCTAGTTCACCCATACAAACCATAGGTTATGATAAAAATCAAGTCGTAACTGCTGAAGAACTTAATTATATTTTAAACAATATATCTGAATGGCAGACGTATTTCAAAGACTTCACAGAGGAACTTCAAACGGAGTTTGATAGTAAGATCCAAGAGTTAGAAGACCAAATAGAGAAAGAACGTGTTTCCATAGGGGAGATAATCGAGATAACGGGTGATTCAACAAACCCCTCGATACTCAAAGGGTATGGTACTTGGGAATCTTTTGGAGGAGGTCTTACAACAGTTGGTGTGGGCTCCCACACAGATGATAGAGGTGAGAACAAAACATGGACAGATGGTCAGACTGAAGGTGAATACCAACACGTTCAAACAGAATCTGAACTTGCCCAACACAATCACACTTTCTCAGGTACAACGGAAGATAATACAGTAGCTACAAGTATAACACAATACTTAACACCTAATGGGACAGATACAGGTACAGCTCAACAACAAATTATGNATAGAACGAGAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
29bdc493ae60dbaf30708b00c93690bcd54759a9841625841c035c89ae1a7d77
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8351
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio parahaemolyticus phage qdvp001 Wang,W., Wang,J. and Lin,H. 2016-07-04 — GenBank