Protein

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Genbank accession
AGZ17760.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,56
Protein sequence
MGRITGSWERPIQGVSQQADKDRIDGQCTKQENLTPSPLYGLMKRVGTRYVKKLLDNVDPRSLWYQYDRGGSERYLILVEPNKYPRVFDLDGNERTVTVKGVSGSYLKVTEPKKLLRLKTIADYTFIANTSVVTETLTDKTDSNPSMAIVYCQYATYGRDYQIIIDGDVISSVHTPDGATSSMIEQVRTNYIAEQLHNKLIGKQKTTESVRVKTQTQTGGSGSSSSTTYYIDVSKSVSKVVSLYNKSTGGYVSYNNISGNRITLGTGSNRDNLIEVVYEAVGAPDSPYSSELHGNTLFVKRLDGKPFSISTVDSANGDDLVAIQDKVRQLSNLPPYAPDNYIVKVQNKEGFEANSYWLKAVPDNGTDQSGSKVRWVESTAQDTLYKFNHNTMPHQLVSLADGTFELSYGEWEERKVGDEKTNPFPSFLGNTIQSIGTFQNRMMFTSGESAVFGKTNEYFNFFRETTQEESPDDPIDVFADADQVNNLLHHAILEGDIVFFAENGQFLIDGSKPITKDGLVFKKVTSYPMNIDAQPAVTGESVMFSFLAGKYAGIREMFTDSLTDTKRARPITEHVAEYIEGIPVDLIASPNINLLLVRTNINNHIVYAYNWLWSGEQRVQAAFHNWVFEGDVLFAKFVSDKVYFVIDRGNGIYLEQMPISNDADDDGITFPVSLDQRAVVTANWTGTRWEWTTPYQVTDLKKMEYVRGTGCWDADKGTSVIFETDGNKFWSYDDLADVLGGVTSCNLTVGTKYTSKFIPTQPSIKDQSGRVMGLDRFTLGKVTLNYESIGNITVHVYDLYSENRKWRYEYNGRRMGSWNNRIGFAPLAAGQFSFPVRLQSQQAQFEIVTDDYRPFILRDMEWEGMFKQRGRRI
Physico‐chemical
properties
protein length:873 AA
molecular weight: 98367,96470 Da
isoelectric point:5,44673
aromaticity:0,11226
hydropathy:-0,45739

Domains

Domains [InterPro]
IPR058003
TTP
1–207
IPR058003 IPR058003
DC_1891
ATT
1–253
DC_1891
AGZ17760.1
1 873
Architecture
ATT
TTP
ATT 1-253 | TTP 254-873
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGZ17760.1
1 873
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9922
Central domain 139 349 212 0,3104
C-terminal 350 873 523 0,1845
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-349
C-terminal
350-873

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage phi-A318
[NCBI] 		1151014 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Kaohsiungvirus
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGZ17760.1 [NCBI]
Genbank nucleotide accession
KF322026 [NCBI]
CDS location
range 25692 -> 28313
strand +
CDS
ATGGGAAGAATCACTGGTAGTTGGGAGCGACCTATACAGGGAGTTAGCCAACAGGCTGACAAAGACCGGATTGATGGGCAATGTACTAAGCAAGAAAACTTAACACCCTCTCCATTATACGGATTGATGAAGAGAGTAGGTACTCGTTACGTTAAGAAACTTCTTGATAATGTAGACCCTCGTTCACTTTGGTATCAGTACGACCGAGGTGGCTCAGAGCGTTATTTGATACTCGTTGAGCCTAATAAGTATCCTCGTGTATTTGACCTAGACGGTAATGAGAGAACAGTAACTGTTAAAGGAGTTTCAGGTAGTTACTTGAAGGTGACAGAGCCTAAGAAACTCCTACGACTAAAGACTATTGCTGACTATACATTTATAGCTAATACCTCTGTAGTGACGGAGACATTAACAGACAAGACTGATTCAAACCCATCAATGGCTATTGTGTATTGCCAGTATGCGACATACGGTAGAGATTATCAAATCATAATTGATGGTGATGTAATATCTAGCGTCCACACGCCAGATGGTGCAACGTCTAGTATGATTGAGCAGGTACGTACTAACTATATTGCAGAGCAGTTACACAACAAGCTTATTGGAAAACAGAAAACAACAGAGAGTGTTCGTGTGAAAACACAGACTCAAACTGGAGGCTCTGGAAGCAGCTCATCAACAACATATTACATTGATGTATCTAAAAGTGTATCAAAGGTTGTTAGCTTATACAACAAATCTACAGGTGGATATGTCTCCTATAACAATATAAGTGGTAATAGGATTACGCTAGGTACTGGCTCAAACAGAGACAACCTTATCGAAGTTGTGTATGAAGCAGTTGGCGCACCAGATAGTCCATATTCGTCTGAGTTGCATGGTAACACACTCTTCGTAAAGAGGCTTGATGGTAAGCCATTTAGTATCTCTACTGTAGATAGTGCTAACGGTGATGACTTGGTAGCTATACAGGACAAGGTTAGACAGTTATCTAACCTACCTCCATATGCGCCTGATAACTACATCGTTAAGGTACAGAACAAAGAAGGGTTCGAAGCAAACTCTTATTGGCTGAAAGCTGTACCCGATAACGGGACAGACCAATCAGGTTCTAAGGTTCGTTGGGTTGAGTCTACAGCACAAGATACTTTGTACAAGTTCAATCATAACACAATGCCACACCAATTGGTTAGCCTAGCTGATGGTACTTTCGAACTGAGCTATGGTGAGTGGGAAGAGCGTAAAGTAGGTGATGAAAAGACTAATCCATTTCCATCCTTCTTGGGTAACACGATACAAAGTATTGGTACGTTCCAGAACCGGATGATGTTCACTTCTGGTGAATCTGCGGTGTTCGGCAAGACAAACGAGTACTTCAACTTCTTCAGGGAGACTACTCAAGAAGAGTCACCAGATGACCCTATTGACGTTTTCGCTGACGCAGACCAAGTTAATAACTTATTGCATCACGCGATACTAGAGGGTGACATAGTGTTCTTTGCTGAGAATGGTCAATTCCTTATTGATGGTTCAAAGCCTATAACAAAAGATGGCCTTGTATTTAAGAAAGTTACTTCATACCCAATGAATATAGATGCACAGCCAGCAGTTACTGGTGAGTCAGTTATGTTCTCTTTTCTAGCAGGTAAGTATGCAGGTATTCGTGAGATGTTCACAGACTCTCTTACAGATACTAAGAGAGCCAGACCAATCACAGAGCATGTGGCTGAGTACATTGAGGGTATACCTGTTGACCTGATAGCTAGTCCTAATATTAACTTACTTCTTGTTAGGACTAACATAAACAACCACATAGTGTATGCATACAATTGGTTATGGTCAGGGGAACAGAGAGTACAGGCTGCTTTCCACAATTGGGTATTTGAAGGAGATGTACTATTTGCCAAGTTTGTAAGTGACAAGGTATACTTCGTAATAGACAGAGGAAACGGTATATACCTAGAGCAAATGCCTATTAGTAATGACGCAGATGATGACGGTATTACTTTCCCTGTAAGTCTTGACCAACGAGCAGTTGTCACTGCTAACTGGACAGGTACTAGGTGGGAGTGGACTACTCCATACCAAGTTACAGATTTGAAGAAGATGGAGTATGTCAGAGGTACAGGATGTTGGGATGCTGATAAAGGTACTTCAGTTATCTTTGAGACGGACGGCAACAAGTTCTGGTCATATGATGACTTAGCGGATGTACTAGGAGGTGTAACATCGTGTAACCTTACCGTAGGCACTAAATACACTTCCAAGTTTATACCGACTCAGCCTAGTATCAAAGACCAATCTGGTCGTGTGATGGGGCTTGATAGGTTTACACTTGGTAAAGTAACACTCAACTATGAAAGTATCGGTAATATTACTGTACATGTATATGACCTTTACTCGGAGAACAGAAAGTGGAGGTATGAGTACAATGGTCGCCGTATGGGTAGCTGGAATAACCGAATCGGTTTCGCCCCACTAGCGGCAGGTCAGTTCTCATTTCCTGTACGTTTACAATCCCAACAAGCTCAGTTCGAGATTGTAACAGATGATTACCGACCATTCATCTTAAGAGATATGGAGTGGGAAGGTATGTTCAAACAAAGAGGCAGACGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3a6b142c86aef176fd14c548bb6e3ba6a929433b71d4baabd99921903e5dbafe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8894
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences characterizing five mutations in RNA polymerase and major capsid of phages [greek small letter phi]A318 and [greek small letter phi]As51 of Vibrio alginolyticus with different burst efficiencies Liu,W., Lin,Y.R., Lu,M.W., Sung,P.J., Wang,W.H. and Lin,C.S. 2014 24952762 GenBank