Protein

View in Explore
Genbank accession
AND75137.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSIIKVNQIQDIEGENGINVSDLVSKITLASSTGSSQIGHGVGTVEDALDAVKSVTDSLTSSTGSNSIMYKGRSVSDRLGDSVSVKDHGAVGNGTDATAAFNAALAVSSSVYVPEGVYLIGDVELNGKRLYGNGTILKKSTAQQSIIVKGNGSEVIGLKFKSQSANGQPNTDIRLGDGAKNVRIKGNHFAGRTYSAIYGADDTTTTLYTNPVDGVVIEGNVFDAEDKVNNLRYARHIYLREVKNLVVTGNLFRNSSFDSIRLRGRNGYCIITSNNFTDIGLFPPPDDQTRDAVDTYWGGDLLIVSNNTISGVGYIGLDLKNSARSGVDDAGVVGERTRQFIVTGNIIDKTWMAGIVISGDDSSTLPLHSCIVHGNIIRRFNQSATGTGTGQSGINIKALARHVKISTNIIQEGNARGVFVEGTTAYLDLVFNTIINNAEAGAVLTDVQDMKIIGNTMAQDTNVPNSGQQATGLIVSNPSNLAKTMIMAFNTFKDNGTLQVSLNPSGNRFTGFAQIIGNIESGPGKMSDSYPRTGHSRRIMHGTAIPTSADGTFEVGDILYNVAPVAGGFMGWSCVTAGSPGTWKTFGAISA
Physico‐chemical
properties
protein length:591 AA
molecular weight: 62332,97400 Da
isoelectric point:6,16404
aromaticity:0,06430
hydropathy:-0,13130

Domains

Domains [InterPro]
DC_0148
STR
3–591
DC_0148
IPR012334
STR
64–272
IPR012334 IPR012334
IPR011050
STR
81–357
IPR011050 IPR006626 IPR006626 IPR006626 IPR006626
IPR006626
Unmapped
179–219
IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
301–456
IPR039448
IPR011050
STR
304–508
IPR011050
AND75137.1
1 591
Architecture
STR
STR 3-591
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AND75137.1
1 591
Domain Start End Length (AA) Confidence
N-terminal 1 96 96 0,9770
Central domain 97 523 428 0,9944
C-terminal 524 591 67 0,9427
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-96
Central
97-523
C-terminal
524-591

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage pf16
[NCBI] 		1815630 Uroviricota > Caudoviricetes > Chakrabartyvirus >
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AND75137.1 [NCBI]
Genbank nucleotide accession
KU873925.1 [NCBI]
CDS location
range 144848 -> 146623
strand +
CDS
ATGTCAATTATCAAGGTTAACCAAATTCAGGACATCGAGGGCGAAAACGGGATCAACGTCAGTGATCTTGTAAGTAAGATTACCCTCGCCTCGAGTACCGGATCTTCACAGATTGGTCACGGTGTAGGTACTGTTGAAGATGCGTTGGATGCTGTAAAGAGTGTTACTGACTCACTCACATCCAGTACAGGATCTAACTCAATCATGTACAAGGGTAGGTCAGTTTCTGATCGATTGGGTGATAGTGTAAGTGTAAAGGACCATGGTGCCGTAGGTAACGGGACGGATGCAACTGCAGCGTTCAACGCTGCTCTGGCTGTCAGCTCGTCTGTGTATGTACCTGAAGGTGTGTACTTGATCGGAGACGTTGAGCTGAACGGTAAACGTTTGTACGGTAATGGCACCATACTCAAGAAATCAACAGCGCAGCAATCCATCATTGTGAAGGGTAACGGCTCTGAAGTGATTGGCTTGAAGTTCAAGAGCCAATCTGCCAACGGACAACCTAACACTGACATTCGGCTTGGAGATGGTGCCAAAAACGTTCGCATCAAAGGGAACCACTTTGCGGGTAGAACCTACAGTGCAATCTACGGTGCTGACGACACTACAACGACGCTCTACACCAACCCAGTAGACGGTGTTGTAATTGAAGGTAACGTGTTTGATGCAGAGGACAAGGTGAACAACCTCAGGTATGCTCGCCACATCTACCTGCGTGAGGTTAAGAACCTGGTTGTTACGGGCAACTTGTTCAGAAACAGCTCATTTGACTCTATTCGTCTACGGGGCAGGAACGGGTACTGCATCATAACATCCAACAACTTCACCGACATTGGTTTGTTCCCGCCACCTGACGACCAAACCCGCGATGCGGTTGATACATACTGGGGCGGCGATCTGTTGATTGTGTCAAACAACACAATTAGCGGGGTTGGATACATTGGCTTGGACTTGAAGAACTCGGCCCGTAGTGGTGTTGATGATGCTGGAGTTGTGGGTGAACGTACTCGTCAGTTCATAGTAACAGGGAACATCATTGACAAGACTTGGATGGCAGGTATTGTTATCTCTGGTGATGACTCATCTACTCTGCCACTCCATAGTTGCATTGTCCATGGTAACATTATCCGCAGGTTTAACCAGTCAGCCACTGGTACCGGTACTGGCCAATCAGGGATAAACATAAAGGCGTTGGCTCGCCATGTGAAGATCTCAACGAACATCATCCAGGAGGGTAATGCTCGTGGCGTGTTTGTTGAGGGGACGACTGCGTACTTGGACCTTGTGTTCAACACGATCATCAACAACGCTGAGGCTGGTGCTGTATTGACTGATGTTCAAGACATGAAGATCATCGGTAACACTATGGCCCAAGACACAAACGTTCCGAATAGCGGTCAGCAGGCAACAGGGTTGATTGTGTCAAACCCATCCAACCTCGCTAAGACTATGATCATGGCGTTCAACACGTTCAAAGACAACGGGACGTTGCAAGTGTCTCTGAACCCGTCAGGGAACAGGTTTACCGGGTTTGCACAAATCATTGGTAACATCGAGTCGGGCCCAGGAAAAATGTCTGACAGCTACCCTAGAACAGGGCACTCGAGGCGTATCATGCACGGTACTGCGATTCCAACTTCAGCAGACGGAACCTTTGAAGTGGGTGACATTCTGTACAACGTTGCACCCGTTGCTGGTGGGTTCATGGGCTGGTCTTGCGTTACTGCTGGGTCACCTGGCACGTGGAAGACGTTCGGTGCCATCAGCGCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a57b6f2bf023559b37f14076dc8804406e9dc910050bbd07a342eca4e679fd4b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8148
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterisation of pf16 and phiPMW: Two novel phages infecting Pseudomonas putida PpG1 Magill,D.J., Krylov,V.N., Shaburova,O.V., Allen,C.C.R., McGrath,J.W., Quinn,J.P. and Kulakov,L.A. 2017-09-06 — GenBank