Protein

View in Explore
Genbank accession
YP_007501031.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MIQRLGSSLVKMPNGLTLTQWLQPANIIKVDDAPYNGDLIAAYNAVPVTGNYALVLTNHTYNAVGLFDAGRNTKPNITIIGAGMPQLAGDRSSFVAGSGTIIKGAVKNSAKGFQIANLGIDCGNTVSRTDYQPARFEDPLQIYGCGANANIFIDNVKCLSAVSVDERPGTHSILLEQTEGVTIGYVECIGGFHGLTIKCRNLRGGIAHCYGQYGDGFIIKSDAGGAASHIYMERIQVGHPDQSMWPDVHLGGIYDAHDGVTIDSVSIGELHVVRGTWGLIPADNATGNITNFHIGHYECHLTYGNHYSLVINNKVVGWTMGTHNITTCSGGIKVDPASVYVNIGTGRSTNNTESGYSLGGNTLIHGELIADANGKYGVEYSGGLGLDVSKIHGFQNPLGTYSGYSSAIQSLLWPDAGFEAMVTGRTVTLRGSLTKGSTAWCGQVLDAVKPTRDIRIYAWAVGIGGSMVPVEAWVRSATGAIDVVGKDSVGEGQIVSFTGSYIFK
Physico‐chemical
properties
protein length:504 AA
molecular weight: 53312,50260 Da
isoelectric point:6,12994
aromaticity:0,08333
hydropathy:-0,00139

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007501031.1
1 504
Domain Start End Length (AA) Confidence
N-terminal 1 35 35 0,9414
Central domain 36 394 360 0,9937
C-terminal 395 504 109 0,9912
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-35
Central
36-394
C-terminal
395-504

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage UAB_Phi78
[NCBI] 		979726 Uroviricota > Caudoviricetes > Autographivirales > Molineuxvirinae > Zindervirus
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007501031.1 [NCBI]
Genbank nucleotide accession
NC_020414 [NCBI]
CDS location
range 42151 -> 43665
strand +
CDS
ATGATACAAAGATTAGGTTCTTCCTTAGTGAAGATGCCAAATGGTCTTACATTGACACAGTGGTTGCAGCCTGCAAACATCATCAAGGTAGATGATGCACCGTACAATGGAGACCTTATTGCTGCATATAATGCTGTTCCAGTTACAGGTAATTATGCTTTGGTTCTTACCAACCACACTTACAATGCAGTTGGCTTGTTCGATGCAGGTCGTAACACGAAGCCTAACATCACCATCATTGGTGCTGGTATGCCTCAACTTGCAGGAGACAGATCGTCATTTGTTGCAGGTTCGGGTACTATCATTAAGGGTGCAGTAAAGAACTCCGCCAAGGGTTTCCAGATTGCTAACCTAGGTATTGATTGTGGTAACACAGTTAGTCGTACAGATTACCAACCTGCACGCTTCGAAGACCCACTACAGATATATGGGTGTGGCGCTAATGCTAACATCTTCATCGATAACGTGAAATGCCTTAGTGCAGTTTCTGTAGATGAACGACCGGGAACACACAGCATTCTGCTTGAGCAGACTGAAGGTGTCACCATCGGCTATGTAGAGTGCATTGGTGGCTTTCACGGCCTAACCATCAAGTGCCGTAACCTACGTGGTGGGATTGCACATTGCTATGGTCAGTATGGTGATGGCTTCATCATCAAGTCCGATGCTGGTGGTGCAGCGAGTCACATCTACATGGAGCGAATTCAGGTAGGACACCCAGATCAGTCTATGTGGCCTGATGTGCACTTGGGTGGTATCTACGATGCGCACGATGGTGTAACCATTGATAGTGTTAGCATTGGTGAGTTGCATGTTGTACGAGGAACTTGGGGTCTGATACCTGCTGATAACGCCACTGGCAATATCACCAACTTCCATATTGGACATTATGAGTGCCACCTTACTTACGGCAACCACTACTCCCTTGTTATCAACAACAAGGTTGTAGGTTGGACTATGGGTACTCACAACATCACGACCTGCTCAGGTGGTATCAAGGTAGACCCTGCATCAGTGTATGTGAACATAGGTACTGGTCGCTCTACAAACAACACTGAAAGTGGGTACTCTCTTGGTGGCAACACCTTGATTCATGGTGAACTGATTGCAGATGCGAATGGTAAGTATGGTGTAGAGTATTCTGGTGGTCTAGGTCTTGATGTAAGTAAGATTCATGGATTCCAGAATCCACTTGGTACTTACTCAGGGTACTCTTCTGCTATCCAATCCCTACTGTGGCCTGACGCTGGGTTTGAAGCTATGGTAACAGGTAGAACTGTGACTTTACGTGGTTCACTCACTAAAGGCTCTACTGCATGGTGCGGTCAGGTGCTTGATGCTGTTAAGCCTACACGAGACATTCGTATCTACGCATGGGCTGTTGGCATTGGTGGTTCAATGGTTCCTGTGGAAGCATGGGTTCGTTCTGCTACTGGTGCTATAGATGTCGTAGGCAAGGATTCGGTTGGCGAAGGGCAGATTGTTAGCTTCACTGGCAGCTACATCTTCAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5b4c3a980af4d99659353b1df5f841e0d18692b908e398b461a9f04f9b5d7f8c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7812
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
New enterobacteriophages and their use to control Salmonella enterica Spricigo,D.A., Bardina,C., Cortes,M.P. and Llagostera,M. 2013-07 — GenBank