Protein

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Genbank accession
GENB_f36a4686fce2 [GenBank]
Protein name
receptor binding protein
RBP type
TSP
Evidence RBPdetect
Probability 0,58
Protein sequence
MADLKRKFRAQEGLDAAGEKVINVQTADRTVPSDGVNVEFLVQENTLQQYDETRWYPKDFAVIYDNRIWVSNREIIKPSGAFNELFWTALRTDAKWKTESAGTINLKSGDFISADTSGRGTIKFVLPSAPQDGDTIFIKDIGGQPGYADVTIDASVQSIVWLGAQVRSVRMTHPYSQMVLVFSNRLWQLYISDNERTATTITPASIHEAQANEFIVRRYTTGAPIRVTLPKFANDGDIINFTDMDGMNPLFHMFVSTFDANTSIGSVGTTSIEVRSSGDGFVMFDAVEKLWRIWDGDLRTRLRIIKEDTEVRPNDHVMVFGTNNSTIKKVVITLPPAPGIGDTVKISLNYMRKGQTVDITCTGTDTIAASVSLLQFPKRSEYPPDTTWVQNKTLSFNGDTSYVPVLDLSYIEDGGLKYWVVSDNKPTVERVDSKTDATRARLGVIALATEAQAMVDHENNPEKELAITPETFAKRVATKLRRGIARLVTLAEIQAPTTGPHLDDVIVTPAMLNEKTATETRRGVAEIATQSKTDGSTDDVTIVTPKKLHNRKASEILTGILALVKTGITTVAGVNRDTKGTNVYDNTENTKAVTPASLFENKATYTSQGGTYLATENEVINGTVHDPKVPTAVTPVELHKKTATEGRIGFTEVATQPETDAGTDDFRYITPKKLSGRKATQDLTGLSRIATQPEFNAGALDDVISTPFKIKTYFSDPARHSVEPLSGLVESGNSWDHYKLDIKKASETQRGTLAVATKILVDAGVDDQTIITPKKLQDKKTSETTEGIIQIATRLETTTGTVGNKAVPPVHLKYAIQEQADWEATPTRRGPVKLTELALTFIGDKVFGSGVKFNAVTGLYENDDAKLTAGNYFKTGYAVSPFEMNKTLQNFLPINAIATDSHKLDGLDSLQFIRRDIDQTVNGSLTLTKQLNTSAPLVSSSTSKFTNVMATIDLTVGDDSSHSVINLNAKGNHWLIDAQSQSTYLDFTADADVLRLKRDGDVEVGQTLKAGNRIDAMKGFSVEGGTMVINPTPSNIQFGSQSKATNIQTTDASNLTVTDSTGTSTVITTKNMVNQIGLNFVKKIGDSMTGNLLIDATLRVQIPEGVVTPDQPPTDANPNAWSSSIKTSAVYNKLPGFVVPVYGTNKEGNPVAIDYTEVKGPGTLTQHGIDKNSIWQIWAPCPSTVDATYFAQTFWIRNFNALTGKWDKWGRMYTSNNPPTSKEIGAVAAGGSAFDNLTIRDWLQIGNVRITPNPVTQSVDFTWIP
Physico‐chemical
properties
protein length:1265 AA
molecular weight: 138190,85680 Da
isoelectric point:5,71643
aromaticity:0,07431
hydropathy:-0,32079

Domains

Domains [InterPro]
DC_1986
ATT
9–136
DC_1986 DC_1209
IPR048391
ATT
1113–1213
IPR048391
GENB_f36a4686fce2
1 1265
Architecture
ATT
STR
ATT
STR
ATT 9-136 | STR 342-1112 | ATT 1113-1213 | STR 1214-1248 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_f36a4686fce2
1 1265
Domain Start End Length (AA) Confidence
N-terminal 1 981 981 0,8987
Central domain 982 1180 200 0,2185
C-terminal 1181 1265 84 0,1835
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-981
Central
982-1180
C-terminal
1181-1265

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage KM16
[NCBI] 		2797303 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella paratyphi
[NCBI] 		54388 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
MW325771.1_CDS_[163188..166985] [NCBI]
Genbank nucleotide accession
MW325771.1 [NCBI]
CDS location
range 163188 -> 166985
strand +
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
31d05bdc316648a8d4c07965555939f72998f1d7e27d1253b74f137c999a8bbb

                    

                    
                      ColabFold
                    
                  

                  

                  

                    

                      Source
                      ColabFold
                    

                    

                      Method
                      ColabFold
                    

                    

                      Resolution
                      0,2843
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
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Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50