Protein

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Genbank accession
YP_011108736.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALVSQSIKNLKGGISQQPEILRYPEQGTLQVNGWSSETEGLQKRPPMVFIKSLGGRGYLGEDPYIHLINRDEYEQYYAVFTGNDVRVFDLSGYEYQVRGDRSYVTVNNPKDNLRMVTVADYTFIVNRTRQVRESQHLTNGGTFRDNVDALINVRGGQYGRKLEVNINGVWVSHQLPPGDNAKEDPPKVDAQAIAEALATLLRAAHPTWTFNVGTGFIHCIAPVDTTLDIFETKDGYADQLINPVTHYVQSFSKLPLNAPDGYMVKIVGDTSKTADQYYVKYDKSQKVWKETVGWNISIGLDYTTMPWTLVRAADGNFDLGYHDWKDRRAGDEDTNPQPSFVNSTITDVFFFRNRLGFISGENIVMSRTSKYFEFYPPSVANYTDDDPLDVAVSHNRVSVLKYAVSFAEELLLWSDEAQFVLSANGVLSAKTAQLDLTTQFDVSDRARPYGIGRNIYYASPRSSFTSIMRYYAVQDVSSVKNAEDMTAHVPNYIPNGVYSINGSGTENFACVLTKGAPSKVFIYKFLYMDENIRQQSWSHWDFGDGVEVMAANCINSTMYMLMRNAYNVWIAAVDFKKNSTDFPFEPYRFHVDAKRSYHISETAYDIETNQTVVNVKDIYGASFSKGTVAICESDGKITEYEPTGSSWDSTPDIRISGDISGNDIVIGFLYDFQYVFSRFLIKQEQNDGTTSTMDSGRLQLRRAWVNYQDTGAFTVSVDNGNREFNYLVNARVGSTGLRLGQKATTTGQYRFPVTGNALYQKVSLSSFNASPVSIIGCGWEGNYTNRASGI
Physico‐chemical
properties
protein length:791 AA
molecular weight: 88865,07770 Da
isoelectric point:5,41263
aromaticity:0,12389
hydropathy:-0,38887

Domains

Domains [InterPro]
IPR058003
TTP
1–791
IPR058003
YP_011108736.1
1 791
Architecture
TTP
TTP 1-791
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011108736.1
1 791
Domain Start End Length (AA) Confidence
N-terminal 1 590 590 0,9103
Central domain 591 780 191 0,2596
C-terminal 781 791 10 0,9654
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-590
Central
591-780
C-terminal
781-791

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage Oda
[NCBI] 		3018522 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Przondovirus
Host Klebsiella michiganensis
[NCBI] 		1134687 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011108736.1 [NCBI]
Genbank nucleotide accession
NC_092455 [NCBI]
CDS location
range 24038 -> 26413
strand +
CDS
ATGGCTCTCGTATCACAATCAATCAAGAACCTCAAGGGAGGCATTAGCCAGCAGCCTGAAATCTTACGGTATCCTGAGCAGGGTACACTTCAGGTCAACGGTTGGTCCTCCGAGACTGAGGGTCTCCAGAAGCGGCCACCTATGGTGTTCATCAAGTCCTTGGGAGGCCGTGGGTATCTTGGGGAGGACCCCTACATTCACCTAATCAACCGCGATGAATACGAGCAGTATTATGCTGTGTTCACAGGGAATGACGTTCGGGTGTTCGACCTGTCCGGCTATGAGTATCAGGTCCGTGGCGACCGCTCTTATGTGACCGTCAACAATCCTAAGGATAACTTGCGGATGGTCACTGTGGCCGACTACACATTCATCGTGAACCGTACCAGACAGGTCCGTGAGAGTCAGCACTTGACCAACGGTGGTACCTTCAGGGATAACGTGGACGCCCTCATTAACGTTCGCGGTGGCCAATACGGTCGTAAGCTCGAAGTGAACATTAACGGCGTCTGGGTGAGCCACCAGCTCCCTCCGGGTGACAACGCCAAGGAGGACCCACCAAAGGTAGACGCACAGGCTATCGCTGAGGCCCTAGCGACTCTTCTCAGAGCAGCGCACCCTACGTGGACGTTCAACGTGGGAACAGGATTCATTCATTGTATAGCTCCGGTAGACACCACACTTGACATATTCGAGACAAAGGATGGGTATGCGGACCAGCTAATCAATCCGGTAACCCATTACGTCCAGAGCTTCTCTAAGTTGCCTCTGAACGCGCCAGATGGGTACATGGTGAAGATTGTCGGAGATACGTCAAAGACCGCCGACCAGTATTACGTTAAGTACGACAAGAGTCAGAAGGTCTGGAAGGAAACTGTTGGGTGGAACATCTCGATAGGACTGGATTACACCACAATGCCTTGGACCCTTGTCAGGGCAGCTGATGGTAACTTTGACCTCGGGTATCACGATTGGAAGGACCGACGTGCTGGCGACGAGGATACCAACCCTCAACCATCCTTTGTGAACTCAACGATAACCGACGTGTTCTTCTTCAGGAACCGCTTAGGGTTCATCTCTGGGGAGAACATTGTGATGTCCCGTACCAGTAAATACTTCGAGTTCTACCCTCCGTCAGTGGCCAATTACACGGACGATGACCCACTAGATGTTGCCGTGAGTCATAACCGAGTGTCGGTCCTGAAGTACGCTGTGAGCTTCGCTGAGGAGCTTCTACTGTGGTCTGATGAGGCACAGTTCGTCCTGTCGGCCAACGGTGTGTTATCCGCTAAGACTGCACAGCTGGACCTGACCACTCAGTTCGATGTGTCAGACCGTGCGCGTCCTTACGGTATCGGCAGGAATATCTACTATGCGTCTCCTCGCAGCTCCTTTACGTCCATCATGCGCTACTACGCGGTACAGGATGTAAGCTCCGTGAAGAACGCAGAGGACATGACAGCCCACGTACCGAACTATATCCCGAACGGTGTATATAGCATCAATGGGTCTGGTACGGAGAACTTCGCGTGTGTACTGACCAAGGGTGCTCCCAGCAAGGTGTTCATCTACAAGTTCCTCTACATGGATGAGAACATCCGGCAGCAGTCATGGTCGCACTGGGACTTCGGGGATGGTGTTGAGGTTATGGCCGCAAACTGTATCAACTCTACGATGTACATGCTGATGCGGAATGCCTACAACGTGTGGATAGCTGCGGTGGACTTTAAGAAGAACTCTACGGACTTTCCGTTCGAGCCTTACCGATTCCACGTGGACGCCAAGCGTTCATACCACATCTCAGAGACTGCGTACGACATTGAGACGAACCAGACGGTAGTGAACGTCAAGGACATCTACGGTGCGTCGTTCTCTAAGGGTACCGTGGCAATCTGCGAGAGTGACGGTAAAATCACCGAGTACGAGCCTACGGGTTCCTCTTGGGATTCAACCCCGGACATCCGCATTAGCGGTGACATCTCAGGTAATGATATCGTCATCGGGTTCCTGTACGACTTCCAGTACGTGTTCAGTCGGTTCCTCATCAAGCAGGAGCAGAATGACGGGACAACGTCAACTATGGACTCTGGTCGTCTACAGCTGCGTAGAGCTTGGGTGAACTATCAGGACACTGGTGCGTTCACTGTGAGCGTCGATAACGGCAACCGTGAGTTCAACTATCTGGTCAACGCTCGGGTAGGCTCTACTGGTCTCCGTCTTGGGCAGAAGGCCACAACTACTGGTCAATACCGCTTCCCTGTGACGGGTAACGCCTTGTACCAGAAGGTGTCCTTGAGTTCCTTCAACGCTTCCCCTGTGTCAATCATTGGGTGTGGCTGGGAGGGGAACTATACCAACCGCGCCAGCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c7b45c18e25e7558c3a3aaa4873ad061a16e87406002c4d9c1e2311deedb4d76
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2974
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses Elek,C.K.A. and Adriaenssens,E.M. — — GenBank