Protein

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Genbank accession
YP_010739014.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
Protein sequence
MADLGTIGASYGVGSERATDPVGRTLVYSRPSGVATAAPGASLASRQANPRPGPSNITVPGTPSWYGSPRPIGADPQAVYAVGGTVKQRLNGVDSPLVGCMIRLYARRTGMPVGAATSAADGSFLVPGLLPETRGFFAVAFDPDGEPVQNALVFDRLMALPGVPGEIRYESIVLTQGISVSYALRAVYVEGTITWSVSAGALPAGMSLNPSTGVLSGAPTDTGPYSFTVSAVGSAYNSASRSWSGEVAGGLEYRKTLNGTIGLTLVRTGQQDEGYIVVPALPFQFSLFGTLYQNNIYVCANSYVTFGFGASVYSGLSPTNPGRGILLGAADRSWRALYAGSILDGQGYLIRFEGSTTYTTDDGTNIWELAFYVDGTIGLVTGPFPADGITNVSDGTAWRTTGGMAIQPNKAYLGTPTGTGGNYVWEENT
Physico‐chemical
properties
protein length:429 AA
molecular weight: 44521,33060 Da
isoelectric point:4,95564
aromaticity:0,10023
hydropathy:0,02611

Domains

Domains [InterPro]
DC_0374
STR
1–163
DC_0374 IPR013783 DC_0792
DC_2153
STR
156–251
DC_2153
IPR015919
STR
171–243
IPR015919
PF05345
RBD
172–243
PF05345
YP_010739014.1
1 429
Architecture
STR
RBD
STR 1-251 | RBD 252-429
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010739014.1
1 429
Domain Start End Length (AA) Confidence
N-terminal 1 376 376 0,6731
Central domain 377 418 43 0,6433
C-terminal 419 429 10 0,9061
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-376
Central
377-418
C-terminal
419-429

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage vB_SmaS-AXL_1
[NCBI] 		2909581 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010739014.1 [NCBI]
Genbank nucleotide accession
NC_073034.1 [NCBI]
CDS location
range 38892 -> 40181
strand +
CDS
GTGGCCGACCTGGGCACCATAGGCGCATCGTACGGAGTGGGATCAGAGCGCGCGACCGACCCGGTCGGGCGCACTCTCGTGTACTCCCGACCCAGCGGCGTGGCGACCGCCGCGCCGGGCGCCAGCCTGGCGTCGAGGCAGGCAAACCCCCGCCCGGGTCCGTCCAACATCACGGTGCCGGGCACGCCGTCCTGGTACGGCAGCCCCCGCCCGATCGGCGCGGACCCGCAGGCCGTGTACGCGGTGGGCGGCACCGTCAAGCAGAGGCTGAACGGCGTGGACTCTCCTCTGGTGGGGTGCATGATCCGGCTGTACGCCAGGCGCACCGGCATGCCGGTGGGCGCGGCCACGTCCGCGGCCGACGGGTCCTTCCTGGTGCCCGGCCTGCTGCCGGAGACCCGGGGCTTCTTCGCCGTCGCCTTCGACCCCGACGGCGAGCCCGTGCAGAATGCCCTGGTGTTCGACCGGCTGATGGCCCTGCCCGGCGTGCCCGGCGAGATCAGGTACGAGAGCATCGTGCTCACCCAGGGCATCTCCGTGTCGTACGCCCTGCGCGCCGTGTACGTGGAGGGCACCATCACCTGGTCGGTGTCGGCCGGGGCGCTGCCCGCCGGCATGAGCCTGAACCCGAGCACCGGCGTGCTCAGCGGCGCGCCGACCGACACGGGGCCCTACAGCTTCACGGTCTCCGCCGTCGGGTCAGCGTACAACTCGGCATCCCGGTCCTGGTCGGGCGAGGTGGCCGGCGGGCTGGAGTACCGGAAGACCCTCAACGGCACGATCGGCCTCACCCTGGTGCGCACTGGGCAGCAGGACGAGGGGTACATCGTGGTGCCCGCCCTGCCCTTCCAGTTCAGCCTGTTCGGCACCCTCTACCAGAACAACATCTACGTCTGCGCCAACAGCTACGTCACCTTCGGCTTCGGCGCCTCGGTCTACTCTGGCCTGTCCCCGACCAACCCCGGGCGCGGCATCCTGCTCGGGGCGGCCGACCGGTCCTGGCGGGCCCTCTACGCGGGCTCCATCCTGGACGGGCAGGGCTACCTCATACGGTTCGAGGGCTCCACCACCTACACCACGGACGACGGCACGAACATCTGGGAGCTCGCCTTCTACGTCGACGGCACGATCGGGCTCGTCACCGGCCCCTTCCCGGCCGACGGCATCACGAACGTGTCAGACGGCACCGCCTGGCGCACCACCGGCGGCATGGCGATACAGCCCAACAAGGCGTACCTCGGCACGCCGACCGGCACCGGCGGCAACTACGTCTGGGAGGAGAACACGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c59d66a9fcbd77ff99adc9c6ec5891262d253713df5e5e732fada55c928b7e89
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6826
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Stenotrophomonas maltophilia phage AXL1 as a member of the genus Pamexvirus encoding resistance to trimethoprim-sulfamethoxazole McCutcheon,J.G., Lin,A. and Dennis,J. — — GenBank