Protein

View in Explore
Genbank accession
YAF81079.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNPQFAQPKGSTSKESNKDSIARKFGCKKSEVVYAKAGQSLSGYKVIYDKLSQRAYALPSNIGAVTVTSLVDGILTHSGGTVDLGELAVSRREFDTVQGDFTSGVILKVKNEVIAYSHSRYRWNGTFPKVVDPDSVPNSADWINVDANPALSELAKSVGASLIGYKPAGTTTTTGTVKGKLDGFIDFANDYCGGPITGQPDLTSQLQQAIIDAFNSGVGDIKIVGDFYISDMILWYPGVRLLGGRYDTTLIRASNTFPVGGTMLRSYRPPLWNAGCHGLALENIYFVGRSAKDLHAVDINDASYFNLEGVRYDLFNKALSFNRWIDETRVDTGGTITYPNAHSVEMGGQSYFGTVTRCYAGSCVTCVDFNGVVNRCTFTSNTWTSSDLAYNFSNPRGVYETNTFITCNIEGVKVVWEWFFSINSPYHNVWINTSIDNGNPDITCLAKDGGRQTFVGLAIFPYGNPSLVNWYNINPNGHRSTVLGTDLGESLPEDQLKTQVREELHTLTGIANKQWAGQQVTETIPAGGYKAINISIPGLKGNSAVIASLSAIYAGVSVSAASNNTGIVAVIINNHSASPVEINAYLSVTGIAKSFL
Physico‐chemical
properties
protein length:596 AA
molecular weight: 64356,46160 Da
isoelectric point:6,16694
aromaticity:0,10235
hydropathy:-0,12081

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–93
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 DC_1937
G3DSA:3.30.2020.50
ATT
1–95
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
IPR040775
RBD
90–140
IPR040775
YAF81079.1
1 596
Architecture
ATT
RBD
ATT 1-155 | RBD 435-595 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAF81079.1
1 596
Domain Start End Length (AA) Confidence
N-terminal 1 203 203 0,9937
Central domain 204 486 284 0,9916
C-terminal 487 596 109 0,9701
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-203
Central
204-486
C-terminal
487-596

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CBDS-02
[NCBI] 		3459906 Viruses >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF81079.1 [NCBI]
Genbank nucleotide accession
PX104388.1 [NCBI]
CDS location
range 148486 -> 150276
strand +
CDS
ATGAATCCACAATTTGCTCAACCAAAAGGTTCTACTTCAAAAGAATCGAACAAAGATAGTATTGCCCGTAAATTTGGGTGTAAAAAGTCGGAAGTCGTTTATGCCAAAGCGGGACAGTCATTGTCTGGTTATAAAGTGATCTACGATAAGTTGTCTCAACGCGCCTACGCTCTCCCTTCTAACATTGGTGCTGTAACGGTCACCAGTTTGGTCGACGGCATCCTCACACACTCTGGAGGAACCGTAGATTTGGGAGAACTGGCTGTTTCACGTCGTGAATTCGATACTGTTCAAGGTGATTTTACTTCGGGGGTTATCCTTAAAGTTAAAAATGAAGTCATCGCATATAGTCATAGTCGATATCGTTGGAACGGCACTTTTCCAAAAGTTGTTGACCCAGATTCAGTACCAAATTCCGCAGATTGGATAAATGTGGATGCCAATCCAGCATTATCTGAATTGGCTAAATCAGTTGGGGCTTCATTAATTGGATATAAACCTGCTGGAACAACGACCACCACAGGAACGGTTAAAGGCAAATTAGACGGATTTATAGATTTTGCTAATGATTATTGCGGTGGTCCTATCACTGGTCAACCAGATTTAACTTCTCAACTGCAACAAGCAATAATTGATGCATTTAATTCCGGTGTCGGCGATATTAAGATTGTTGGGGATTTTTATATCTCCGATATGATATTGTGGTATCCTGGGGTTCGATTGTTGGGCGGTAGATACGACACTACATTGATTCGAGCTTCTAATACTTTCCCTGTCGGTGGTACAATGTTGCGTTCATATCGCCCACCGTTATGGAATGCTGGTTGTCATGGACTGGCGCTAGAAAATATATATTTTGTTGGCCGGAGTGCTAAAGACTTACACGCTGTGGATATCAATGATGCTTCATATTTTAATCTAGAAGGGGTGCGTTATGATTTATTCAATAAAGCACTTTCATTCAATAGATGGATAGATGAAACTCGTGTTGATACTGGTGGGACTATCACGTACCCAAATGCTCATAGTGTTGAAATGGGTGGGCAATCTTATTTTGGTACTGTAACCCGTTGCTATGCAGGTAGTTGCGTCACTTGCGTAGATTTTAATGGGGTTGTGAATCGTTGCACATTCACAAGCAACACTTGGACGTCCAGTGATTTGGCATATAACTTCAGTAATCCTCGTGGTGTTTATGAAACCAACACATTTATCACCTGTAATATTGAGGGTGTGAAGGTTGTTTGGGAATGGTTTTTCTCGATAAACTCCCCATATCATAATGTTTGGATAAATACCAGTATAGACAATGGTAATCCTGATATCACATGCCTCGCTAAAGATGGAGGTAGACAGACTTTTGTTGGGTTGGCAATTTTCCCTTATGGGAATCCGAGTTTGGTTAACTGGTATAATATAAATCCAAATGGTCATCGCAGTACCGTTCTTGGTACAGATTTGGGGGAATCGTTGCCGGAAGATCAATTGAAAACCCAAGTGCGCGAGGAATTACACACATTAACGGGTATTGCTAATAAACAATGGGCAGGACAGCAAGTTACTGAAACTATCCCAGCAGGTGGATATAAAGCTATCAATATCAGTATTCCTGGTTTAAAAGGAAATTCCGCTGTGATCGCTTCTTTATCAGCAATATACGCTGGCGTTTCTGTGAGCGCAGCCAGTAATAATACTGGGATTGTGGCTGTTATTATAAACAACCATTCAGCATCTCCTGTTGAAATAAACGCATATCTCAGTGTCACAGGAATAGCCAAAAGTTTCTTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
08a7294e43709c4e26c504f8e4eb9d5735dc4635ff3b5ebbf003e3b7d287a8e5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7989
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank