Protein

View in Explore
Genbank accession
YAF80007.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADYKLSELNSIDTIRSDDLLHVRVKKRPEMLGDEDRRMTYQDFLASFKLERFVQIAGSTMTGDLGIVKLLYGGKAVFDPTGSSEITMGDVLKTFKINANGLKLTIADASRSATVYHTLNKPSPNELGMRTNEENDARYARLAVTNNFNIRQAIVTDGEQLTLKKATNAGASYIQGRDANNQQTWYVGQGNANNTNVYLYNHATGSMLTLDATASFNKTLRIMGQVQPSDFSNLDARYFTQTAANQRFAQLAGDNTFSGSNIFTNFVVKKNANAITLQNVDTTAALYIQAKKSDGTRKWYIGNDTDENTVNIYNYLANTQISLGNTIAMSRTVQITGQVQPSDWTNIDSRYIPAGTLSNLPKLNVSNTFTNTQTIVANNEGLIVKNLTQNQPLYIRGVDTANTSRWWIGVGGNNSNVVTWNNSYSGTQIALEPSVIVANKSLAITGQVQPSDFSNLDARYYTQSVANSRYMLASLTGSASEKDGGNGVAWNARTGLYNVTNPTGGASFLVSHMFLGAGSTPSAQLKFEYRNGGMWYRTSRDGYGFEANWSKIYTEAQKPTPSDIGAYTKAETDQKIAQAVSDSTDLNKIYPVGIVTWFNSNVDPNTALPGLTWTYLNNGVGRTIRIAAANGSDVATTGGSDSVTLAVGNLPSHTHSFSATTSSFDYGTKTTNTTGAHTHSVSGSTNNTGAHTHTVGGRYGGDSIGGKPRVQVSGTEQVSSSAGAHAHTVSGTAASNGNHAHTVGIGAHSHTVSGNTGGTGSGSAFSVTNQFYKLMAWVRTA
Physico‐chemical
properties
protein length:781 AA
molecular weight: 83875,60160 Da
isoelectric point:8,94333
aromaticity:0,08579
hydropathy:-0,40730

Domains

Domains [InterPro]
DC_0032
ATT
1–269
DC_0032 G3DSA:6.20.80.10 IPR048388 IPR022246 IPR005003 IPR005003 IPR005003 IPR005003 IPR005003
G3DSA:6.20.80.10
STR
157–218
G3DSA:6.20.80.10 IPR048388 G3DSA:6.20.80.10 DC_2042
IPR048388
ATT
158–247
IPR048388 DC_0026
IPR051934
Unmapped
398–753
IPR051934
YAF80007.1
1 781
Architecture
ATT
ATT
STR
ATT
STR
RBD
ATT 1-269 | ATT 272-355 | STR 356-379 | ATT 380-473 | STR 474-720 | RBD 721-781
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAF80007.1
1 781
Domain Start End Length (AA) Confidence
N-terminal 1 64 64 0,9913
Central domain 65 263 200 0,2534
C-terminal 264 781 517 0,8525
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-64
Central
65-263
C-terminal
264-781

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SenM-L8
[NCBI] 		3459913 Viruses >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF80007.1 [NCBI]
Genbank nucleotide accession
PX104381.1 [NCBI]
CDS location
range 20507 -> 22852
strand +
CDS
ATGGCAGATTACAAGTTGAGTGAATTAAACTCAATCGATACAATCCGTTCAGATGACCTTCTTCATGTCAGGGTTAAAAAGAGACCTGAAATGCTGGGTGATGAAGACCGTCGAATGACCTATCAAGATTTCTTAGCATCTTTTAAGCTTGAAAGATTTGTTCAGATTGCTGGTAGTACTATGACTGGTGACTTAGGGATTGTTAAGTTACTTTATGGTGGTAAGGCAGTCTTTGACCCTACAGGCTCTTCTGAGATTACTATGGGGGATGTTTTAAAGACTTTTAAAATTAATGCAAATGGTCTTAAACTAACTATTGCAGATGCTTCAAGGTCTGCAACTGTTTATCATACTCTTAATAAGCCAAGTCCTAATGAACTTGGGATGAGAACTAATGAAGAGAATGATGCAAGATATGCAAGGCTGGCTGTAACAAATAACTTCAACATTAGGCAAGCAATTGTAACTGATGGTGAGCAGTTAACCCTTAAGAAAGCAACTAATGCAGGAGCTTCATATATTCAGGGTAGAGATGCTAATAACCAGCAAACTTGGTATGTTGGGCAAGGGAATGCAAACAATACTAATGTTTATTTGTACAATCACGCCACTGGCTCAATGTTGACACTTGATGCAACAGCGTCATTTAACAAGACACTAAGAATTATGGGTCAAGTTCAACCTTCTGACTTCTCTAACTTAGATGCTAGGTACTTCACCCAGACAGCAGCTAATCAGAGATTTGCACAGTTAGCTGGTGATAATACTTTTAGTGGCTCTAATATTTTCACTAACTTTGTTGTTAAGAAGAATGCTAATGCTATCACTCTGCAAAATGTAGATACAACTGCTGCTTTGTATATCCAAGCAAAAAAATCAGATGGAACTCGTAAGTGGTATATTGGCAATGATACCGATGAAAACACTGTAAACATCTATAACTACTTAGCAAATACACAAATCTCACTAGGTAACACCATTGCCATGAGCAGAACAGTCCAAATCACTGGTCAAGTTCAACCTTCTGATTGGACTAACATCGACTCTAGATATATTCCAGCAGGAACTTTGAGTAATCTCCCTAAACTTAATGTGTCTAATACTTTCACGAATACACAAACTATTGTTGCTAACAATGAAGGGTTGATTGTAAAGAATTTAACACAAAATCAACCTTTGTATATCCGTGGTGTTGACACCGCAAACACCTCTAGATGGTGGATTGGTGTAGGAGGAAACAATTCCAACGTGGTTACTTGGAACAACAGCTACTCTGGCACTCAAATTGCCCTTGAACCATCAGTAATTGTGGCTAACAAGAGTCTTGCTATCACTGGTCAAGTTCAGCCTTCTGACTTCTCTAACTTGGATGCCAGATATTATACGCAATCTGTTGCTAACTCTAGGTACATGCTTGCAAGCCTCACTGGTTCAGCTTCTGAAAAGGATGGTGGGAATGGAGTTGCATGGAATGCTAGAACAGGGCTATACAATGTTACCAACCCTACTGGTGGAGCATCTTTTCTTGTATCTCATATGTTTTTAGGTGCTGGTTCTACACCATCTGCGCAATTAAAATTTGAATACAGGAATGGTGGGATGTGGTATAGAACATCCAGAGATGGTTATGGTTTTGAAGCTAACTGGTCTAAGATTTATACCGAGGCACAAAAACCAACCCCTTCAGATATTGGTGCATACACTAAAGCTGAAACTGACCAGAAGATTGCACAGGCAGTAAGTGACTCTACAGACCTTAACAAAATCTATCCAGTAGGTATTGTAACGTGGTTTAATAGTAATGTTGACCCTAATACAGCACTTCCTGGGTTAACTTGGACGTACCTGAACAATGGTGTTGGTAGAACTATCAGAATCGCAGCAGCAAATGGTTCAGATGTTGCTACAACTGGTGGTTCAGATTCTGTAACGTTAGCTGTTGGCAACTTACCATCACACACTCACAGTTTCTCTGCGACAACCTCTAGCTTTGACTACGGTACTAAAACCACTAACACTACTGGTGCTCACACCCACTCAGTGAGCGGTTCTACTAACAACACTGGTGCTCATACACATACTGTAGGTGGTCGTTACGGAGGTGACTCTATCGGTGGTAAACCGCGTGTTCAGGTATCTGGTACAGAACAGGTATCTAGCTCTGCTGGTGCTCACGCTCACACTGTGTCTGGTACTGCTGCCTCTAACGGAAACCATGCTCACACTGTTGGTATTGGTGCTCACAGTCATACAGTTAGTGGTAACACTGGTGGTACAGGTTCTGGTTCAGCATTTAGTGTAACTAACCAGTTCTATAAGCTGATGGCTTGGGTAAGAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9c156c8d576789b6b9b89fd93c1f455581e4689c7e79c4590dd6cdf1b39c8926
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7580
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank