Protein

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Genbank accession
AVR55348.1 [GenBank]
Protein name
baseplate wedge subunit and tail pin
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKQDIKIGQAVDDGSGDYLRKGGQKINENFDELYYELGDGDVPYAAGAWKNHKTSDGATLTAEWGKAYVLDTSAGRMNVRLPKGTSNDYNKVIRFRDVYATWQVNPVTIIPGSGDTLKGDSNPREIRTQFADLEMVYCPPGRWEYVENKQINRISNSELSTVVRKEFLVKTAGQTDFPDVFNGTEYNIGNTQVFHRGNILYYGEQFSETDSDFGSIGPGGTLVALDGKSIKLRNPANVGDTVIVVSYLDGISQFRSSYNRRTITLRDSSKTNEASIEGSLLVGDLKNLRYFPLTAFGIDSFVVVNHQSLEVRFNGILQNEAGTAGLPTERCFGVVADDAFTCQALGGEWKNSMIDYVLDIDDNNKLVGIETDRVMEDGDVITLTWYNNQIGTVMELQDIIEETDARYVSKGGPINLTGQVRITDISKPGWPNVAPEPSRTMEVNNVQNLFELVYPIGTIYENAVNPNNPATYMGFGTWVLWGQGKVVAGWNNDTTDPNFAMNNNDLDINGNPSHTAGGTGGTTSNELENAQIPAAKTTEKVLVVDPNGPIVVGGCQFDPDDQGPAYTKYREDFANINPTHTPPKAVNNIQPYVTAYRWLRVS
Physico‐chemical
properties
protein length:602 AA
molecular weight: 66345,90630 Da
isoelectric point:4,68685
aromaticity:0,09468
hydropathy:-0,45797

Domains

Domains [InterPro]
IPR036240
STR
1–233
IPR036240 IPR054430 IPR053827
IPR034695
Unmapped
1–602
IPR034695
DC_2238
STR
1–580
DC_2238
IPR008987
ATT
2–153
IPR008987 IPR056391
G3DSA:1.20.5.960
Unmapped
13–40
G3DSA:1.20.5.960 IPR027411
AVR55348.1
1 602
Architecture
ATT
STR
ATT
ATT 1-265 | STR 266-448 | ATT 449-601 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVR55348.1
1 602
Domain Start End Length (AA) Confidence
N-terminal 1 319 319 0,9601
Central domain 320 518 200 0,1296
C-terminal 519 602 83 0,9631
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-319
Central
320-518
C-terminal
519-602

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacter phage myPSH1140
[NCBI] 		2108137 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Karamvirus
Host Enterobacter cloacae
[NCBI] 		550 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVR55348.1 [NCBI]
Genbank nucleotide accession
MG999954 [NCBI]
CDS location
range 93549 -> 95357
strand +
CDS
ATGAAGCAAGATATTAAAATTGGTCAAGCTGTTGATGACGGCTCCGGCGACTACCTCCGTAAAGGTGGTCAAAAAATTAATGAAAACTTCGACGAGCTCTATTATGAGCTCGGAGATGGAGATGTTCCGTACGCAGCAGGTGCCTGGAAAAACCACAAAACTTCTGATGGCGCTACTCTAACTGCTGAATGGGGTAAAGCTTACGTTCTTGATACGTCAGCTGGACGAATGAATGTTCGTCTTCCTAAAGGTACATCAAATGACTATAACAAAGTAATTCGTTTCCGTGACGTATATGCAACATGGCAGGTAAACCCTGTAACTATTATTCCTGGAAGCGGAGATACTTTAAAAGGTGATTCAAATCCTCGTGAAATTCGCACTCAATTTGCGGACCTGGAAATGGTTTATTGTCCTCCAGGGCGTTGGGAATATGTTGAAAATAAACAAATCAACAGAATTTCTAACAGTGAATTGAGTACTGTAGTTCGTAAAGAATTCTTGGTTAAAACTGCAGGACAGACTGATTTCCCTGATGTCTTTAATGGCACAGAATATAACATCGGCAACACTCAAGTGTTCCATCGTGGTAACATTTTGTACTACGGCGAGCAATTCAGCGAAACCGATTCTGATTTTGGCTCAATCGGTCCTGGCGGTACTTTAGTAGCATTAGATGGAAAGAGCATTAAATTACGCAACCCAGCTAATGTTGGCGATACTGTTATTGTTGTTTCTTACCTCGATGGTATTTCTCAATTCCGTAGTTCTTACAATCGCAGAACAATTACACTAAGAGATTCTTCAAAGACTAATGAAGCATCAATTGAAGGTTCACTGTTAGTTGGCGATTTAAAGAACCTGAGATATTTCCCATTAACTGCTTTCGGTATTGATAGCTTTGTTGTGGTCAATCATCAATCATTAGAAGTTCGCTTCAATGGTATTCTTCAAAACGAAGCTGGTACTGCTGGACTTCCAACTGAAAGATGTTTTGGAGTTGTAGCTGATGATGCATTCACTTGCCAAGCTTTAGGCGGCGAGTGGAAGAACAGTATGATTGACTACGTTCTTGATATAGATGACAATAACAAATTAGTTGGAATTGAAACCGACCGTGTAATGGAAGATGGCGACGTAATTACACTGACTTGGTACAATAACCAAATCGGTACAGTCATGGAACTTCAAGATATTATCGAAGAAACTGACGCTCGTTATGTTTCTAAAGGTGGTCCAATTAATTTAACTGGCCAAGTTCGTATCACTGATATCAGCAAACCAGGTTGGCCTAATGTTGCTCCTGAGCCTTCAAGAACAATGGAAGTAAATAACGTTCAAAACTTATTTGAGCTTGTTTATCCTATTGGAACGATTTACGAAAACGCAGTAAACCCTAATAACCCTGCAACTTATATGGGATTTGGTACTTGGGTTCTGTGGGGACAAGGTAAAGTTGTTGCTGGTTGGAACAATGATACTACTGACCCTAATTTCGCAATGAATAACAATGACTTAGATATTAACGGAAATCCAAGTCATACTGCTGGCGGTACAGGTGGCACAACAAGCAATGAACTTGAAAATGCTCAAATTCCTGCTGCTAAGACAACTGAAAAAGTTTTAGTAGTAGACCCTAACGGTCCTATTGTAGTTGGTGGATGTCAGTTTGACCCTGATGACCAAGGTCCAGCTTATACGAAATATCGTGAAGACTTTGCCAATATAAATCCAACACATACACCACCAAAAGCAGTTAATAACATTCAACCGTATGTTACTGCTTATCGCTGGTTAAGGGTTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d62455686d5686377c6eb9174c841a7b62e5f08c8e1f8af73cb98d94a4a9c05e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6331
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome analysis of lytic bacteriophages against Enterobacter cloacae Ramesh,N., Prasanth,M., Tamhankar,A.J. and Lundborg,C.S. 2018-06-21 — GenBank