Protein

View in Explore
Genbank accession
AZF89929.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSERVLTVGGSKASKPISDFLMVNDYEGPKAGKYYVDLNVAATGSGSPDHPFATVAEAITASNTSIGLAANRWWARRNKIFVCGDGITENLTVLPEKCDIIGCGSDLVPYPRIIGHHTIALAKVGCRFINIGFTLDGTGVGLTIPAGCHGFQILGGMLQPSLAGNTVGVQITDSALFKIQGFEIHRNPGAYGTGICAVGIAVAGTASTHQFLIDDCFVEATEGIDVVANSPAYGSRIKNSIIKATVLTIDDNSDTVIVTDNRLITAANIATTTDGYDFNLALASGNILTGLNGVAATVPFAVIAE
Physico‐chemical
properties
protein length:305 AA
molecular weight: 31677,66840 Da
isoelectric point:5,19187
aromaticity:0,06885
hydropathy:0,28459

Domains

Domains [InterPro]
IPR011050
STR
31–288
IPR011050
IPR011050
STR
35–288
IPR011050
AZF89929.1
1 305
Architecture
STR
STR 31-288 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZF89929.1
1 305
Domain Start End Length (AA) Confidence
N-terminal 1 61 61 0,3409
Central domain 62 266 206 0,8835
C-terminal 267 305 38 0,7890
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-61
Central
62-266
C-terminal
267-305

Taxonomy

  Name Taxonomy ID Lineage
Phage Methanosarcina virus MetMV
[NCBI] 		2488574 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Methanosarcina sp.
[NCBI] 		2213 cellular organisms > Archaea > Methanobacteriati > Methanobacteriota > Stenosarchaea group > Methanomicrobia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZF89929.1 [NCBI]
Genbank nucleotide accession
MK170447.1 [NCBI]
CDS location
range 17198 -> 18115
strand +
CDS
ATGAGTGAAAGAGTTTTAACCGTTGGTGGAAGTAAGGCATCTAAGCCTATTTCAGATTTTTTAATGGTTAACGATTACGAAGGGCCCAAGGCCGGTAAGTATTACGTTGATCTGAATGTAGCGGCAACCGGTAGTGGATCACCCGATCATCCCTTCGCGACTGTTGCAGAAGCAATCACCGCTTCCAACACCAGTATTGGCCTTGCGGCGAATCGTTGGTGGGCAAGACGCAATAAGATTTTTGTATGCGGCGATGGTATTACCGAAAACTTAACCGTTCTTCCAGAAAAATGCGATATCATCGGATGTGGCTCTGATCTAGTTCCTTATCCCCGTATAATCGGCCATCACACTATTGCGTTGGCAAAAGTTGGATGCCGCTTTATCAATATCGGATTCACATTAGATGGAACCGGTGTCGGTCTTACAATTCCAGCAGGATGCCACGGTTTCCAGATTTTGGGCGGTATGCTGCAGCCGTCTTTAGCAGGGAATACAGTCGGTGTACAGATCACCGATTCGGCCCTCTTTAAGATTCAAGGTTTTGAGATTCACCGGAACCCCGGCGCGTACGGAACAGGTATTTGCGCGGTTGGAATTGCCGTCGCCGGAACAGCGTCAACCCATCAATTCCTGATCGATGATTGCTTCGTGGAAGCCACAGAGGGCATTGATGTTGTGGCAAATTCACCGGCATACGGCAGTCGTATCAAGAACAGCATCATTAAGGCAACAGTTCTGACTATTGACGACAATTCAGATACAGTTATTGTCACCGATAATCGTCTGATTACGGCTGCTAATATCGCCACAACCACGGATGGCTATGATTTCAATTTAGCATTGGCCTCCGGCAACATCCTTACTGGTCTTAACGGCGTAGCGGCAACAGTACCTTTTGCGGTGATAGCTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0e2264cf0472a6abb90dbe467e3e8bce746a6fb87d111ff6f5dcb9c4b0ad082c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7537
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification Of a Novel Marker Archaea Virus Characteristic For Hydrocarbon Polluted Samples Molnar,J., Magyar,B., Schneider,G.K., Kovacs,A.L., Rakhely,G. and Kovacs,T. 1993-02 — GenBank