Protein

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Genbank accession
XZO20878.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
METKLSLVNHLLQVVGERRVTTLETGHPSVVQAIQALEGWNRDFLGKGWWFNTNRDVRLVPNNLGEVLLPTEALSFSITKYQLDYMQPADKARFVKRGKRLYDSWKNTYILNKTLIADLVIDIPYEDLPQVAATYLKHWTAEQYYVDDDGDIQKADRLQQRTMLAYHALKAEQMKVMSINALDSPAAQNLRYRVGNTGIHHRAQFLGGGQILR
Physico‐chemical
properties
protein length:213 AA
molecular weight: 24456,66400 Da
isoelectric point:9,00051
aromaticity:0,09390
hydropathy:-0,39765

Domains

Domains [InterPro]
DC_2080
ATT
1–75
DC_2080 DC_1286
IPR033767
TTP
5–146
IPR033767
XZO20878.1
1 213
Architecture
ATT
TTP
RBD
ATT 1-75 | TTP 76-146 | RBD 150-210 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Agrobacterium phage PAT1
[NCBI] 		3388777 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XZO20878.1 [NCBI]
Genbank nucleotide accession
PQ082932 [NCBI]
CDS location
range 22482 -> 23123
strand +
CDS
ATGGAAACAAAACTCAGTCTCGTCAATCATCTACTACAGGTGGTGGGTGAGCGACGTGTGACGACACTTGAGACAGGCCACCCATCAGTCGTGCAGGCCATTCAGGCGCTTGAGGGCTGGAACCGGGATTTCCTCGGTAAGGGTTGGTGGTTCAATACCAACAGGGATGTGCGGCTTGTTCCTAACAACCTCGGTGAAGTTCTTTTACCGACCGAGGCACTGTCCTTCTCGATCACCAAGTACCAGCTTGACTATATGCAACCGGCTGACAAGGCACGGTTCGTCAAGCGCGGTAAGCGGCTGTACGACTCATGGAAGAATACGTACATCCTGAACAAGACGTTGATTGCCGATCTGGTTATCGACATTCCTTACGAGGACTTGCCGCAGGTTGCTGCCACGTATCTGAAACACTGGACTGCCGAGCAGTACTATGTGGACGATGACGGTGATATCCAGAAGGCGGATCGCTTGCAGCAGCGCACTATGCTGGCGTACCACGCTCTCAAAGCAGAGCAGATGAAGGTGATGAGTATCAATGCACTGGACAGCCCGGCTGCACAGAACCTTCGTTACCGCGTAGGTAATACAGGTATTCATCACAGAGCACAATTCTTAGGTGGAGGCCAAATTCTAAGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
83dad4f117c08164f05724ac23d2b57ed54bf57be36d26d156b8954d4fda2145
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8011
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization and Genomic Analysis of a Novel Lytic Bacteriophage PAT1 Infecting Agrobacterium tumefaciens Sabri,M., El Handi,K., Cara,O. and Elbeaino,T. 2024 — GenBank