Protein

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Genbank accession
YP_009789333.1 [GenBank]
Protein name
membrane protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPQGILIDLNDGRPAMEITAGLRAPAVTGSINTNGLSTPASSWDFGLTMSPGSTAFCLPTKAVHVDAYDVIPEVYYMNGFQKVNDGTGRITLSNFNGARGRIIDFAGNCFEILPASSSSSPGILIENSTDFLAISSNSRLMSAAWVGGIQVNGAASLPVSGIPFGKWDNPNVSLESDGSTIWCRDVNYGGIDDVAASTYVQLVIFRNEPPVAGPGLTMSNSSGQIVFSSVRRPFVLSGFIQISNVYQSINGGFFPLLRCGATTRVTGGYNNLRYKGICMSGGSVRAVPGSVIGNYSTQTGARFPFDTNISMALPFIPNFY
Physico‐chemical
properties
protein length:320 AA
molecular weight: 33849,88370 Da
isoelectric point:5,82534
aromaticity:0,10000
hydropathy:0,10219

Domains

Domains [InterPro]
IPR045604
STR
4–297
IPR045604
YP_009789333.1
1 320
Architecture
STR
STR 4-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009789333.1
1 320
Domain Start End Length (AA) Confidence
N-terminal 1 55 55 0,2601
Central domain 56 254 200 0,1010
C-terminal 255 320 65 0,9902
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-55
Central
56-254
C-terminal
255-320

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_CEB_EC3a
[NCBI] 		1933774 Uroviricota > Caudoviricetes > Drexlerviridae > Loudonvirus > Loudonvirus EC3a
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009789333.1 [NCBI]
Genbank nucleotide accession
NC_047812 [NCBI]
CDS location
range 24320 -> 25282
strand -
CDS
ATGCCTCAGGGTATATTGATTGACCTCAATGACGGAAGACCAGCTATGGAGATTACGGCAGGGTTAAGGGCACCTGCTGTGACTGGATCAATAAATACCAATGGACTTTCAACCCCAGCAAGTTCTTGGGATTTTGGATTGACAATGTCCCCTGGCTCTACGGCTTTCTGCCTACCAACGAAGGCGGTCCACGTTGACGCTTATGATGTTATACCCGAAGTTTATTACATGAACGGGTTTCAAAAGGTAAATGACGGCACTGGTAGGATAACGCTCAGCAACTTCAATGGTGCCAGAGGTCGAATAATTGACTTTGCTGGGAATTGCTTTGAGATACTACCGGCTTCATCTTCATCAAGTCCAGGGATACTCATTGAGAACTCAACTGACTTCCTTGCTATATCAAGCAACTCGAGACTAATGTCAGCAGCATGGGTTGGAGGTATACAGGTTAACGGGGCAGCGTCGCTACCAGTTAGCGGAATACCATTTGGTAAGTGGGATAACCCAAATGTGTCTCTGGAGAGTGATGGCAGTACGATATGGTGCCGTGATGTAAACTATGGTGGCATAGATGACGTGGCGGCAAGCACTTACGTTCAGTTGGTGATATTCAGGAATGAACCTCCAGTAGCTGGACCCGGTCTTACAATGTCAAATAGCTCTGGTCAGATTGTTTTCTCCAGCGTTAGGCGACCATTTGTACTTAGTGGATTTATACAAATAAGCAATGTATATCAGTCAATAAATGGTGGATTCTTCCCGCTTCTTAGATGTGGCGCTACGACTAGAGTTACTGGAGGGTATAACAACTTGCGATACAAGGGCATTTGCATGTCTGGAGGCTCTGTTAGGGCTGTTCCTGGCTCTGTAATAGGTAACTATTCAACCCAGACTGGCGCCCGGTTCCCTTTCGACACAAACATATCAATGGCACTTCCATTTATTCCAAACTTCTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e7b6be41d3e82d389c2f49f65260da8d431d55cb7124546fdcd06bb3c8f6dcb7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8399
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Clearing Escherichia coli biofilms with honey-phage combinations Oliveira,A., Ribeiro,H., Melo,L.D.R., Henriques,A. and Sillankorva,S. 2017-12-08 — GenBank