Protein

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Genbank accession
WMM35584.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,81
Protein sequence
MGMNIWDSRESGSTVITDEQGVTRLAAEDDSLVVSCEEDQLIVENPTCTEVVSLGDGQYLRGEKGETGEEPEHEWIDTSLRFRRPDGSWGWLVDLQGEKGEKGDQGIQGPAGIGVEGPQGNDGITRYAWVKYADTVTPTPEEMYQSPEGRIYFGIAYNKLLDEGEGDPLEFDYTQYKWSKILGEDGIPGTPGGQGPTGPAGVGFTWIGEFPEHPTEADIGRPLEDGDTYFNTTDNKVYTYAGGWHTMLESGGEGPIGPQGAPGGGFEYQGEFTSSPSGALVNWLYRNINNDLFYMYDGTSWILATSDGKDSPDGAPCGNGLRFFTTYHDSTTTPARPTLDGDTGGWNPNAHTFTPGTIKWVSQKIATEPELGAWNDPIDITTHEYRGPVGFRGSQSILIPIPGWNGNWDDNIAASACTGGAPQEWDIVTMYKSEDPAVQETRRWAYNPQNSIWEWLVYNYVFLGDVLVDGTLDAQKINVNSTLTVGTGNNVAKVSGEDNIRIAVGHADKTLAPFRVYQDGSVVIDNPPDNINNDDLEVIETYRQNSAPTGTIVTGSIWYDTNDQNKPYRYNGNAWQEVRDDGVITDAKANGTIYPDQDNLSISGNYVSGSSGWAIDRYGNSEFNNSTFRGDVYASSLTLTGSGAQLSSNDYTSGLDGWTINSDGTAEFNDVTVRGTGYFTDGVFGGTVYAEHISGDIVSGIVKANPTASEIRPGGVAGTWIDLSTVVNVSHTRPYPRRLQLTATDGYDIIQFMAEVERNVGFILTFELVSSTGVTVWSTSKSYSSIGSGDDNLITVGFPSINGYIPANTPAGSYKFRVKSNHDIFHAWYMYRSLGTARIAIDSQLVAYLFKDSSELS
Physico‐chemical
properties
protein length:857 AA
molecular weight: 93264,69550 Da
isoelectric point:4,32047
aromaticity:0,10968
hydropathy:-0,48751

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WMM35584.1
1 857
Domain Start End Length (AA) Confidence
N-terminal 1 647 647 0,9695
Central domain 648 846 200 0,1959
C-terminal 847 857 10 0,9930
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-647
Central
648-846
C-terminal
847-857

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PJN101
[NCBI] 		3072195 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMM35584.1 [NCBI]
Genbank nucleotide accession
OR204649.1 [NCBI]
CDS location
range 60209 -> 62782
strand -
CDS
ATGGGAATGAATATTTGGGACTCACGTGAAAGTGGGTCTACTGTAATCACAGATGAACAGGGAGTCACTAGATTGGCTGCCGAGGATGATTCTTTAGTTGTCTCCTGTGAAGAAGATCAGCTTATTGTTGAGAATCCTACATGTACAGAGGTTGTCTCTTTAGGAGACGGTCAGTATTTACGTGGGGAAAAGGGTGAGACCGGTGAAGAACCAGAGCATGAATGGATAGACACATCATTACGTTTCCGTAGACCTGATGGTTCTTGGGGATGGTTGGTAGATCTTCAAGGTGAGAAGGGTGAGAAGGGTGACCAAGGTATTCAAGGTCCTGCCGGTATTGGTGTGGAAGGTCCGCAAGGTAACGACGGTATTACTCGTTATGCTTGGGTTAAGTATGCAGATACAGTTACTCCAACACCAGAAGAAATGTATCAATCTCCTGAAGGACGCATCTACTTTGGTATTGCATATAACAAACTGTTAGATGAAGGTGAGGGTGATCCATTAGAGTTTGACTATACTCAATACAAGTGGTCAAAGATCTTAGGCGAAGACGGTATTCCGGGTACTCCGGGTGGTCAAGGTCCTACGGGCCCTGCTGGTGTAGGCTTTACTTGGATAGGTGAGTTCCCTGAGCATCCAACTGAGGCAGACATTGGTCGTCCATTAGAAGATGGTGATACATACTTCAATACAACAGACAACAAGGTATACACCTATGCTGGAGGCTGGCACACAATGCTTGAGTCAGGCGGTGAAGGTCCAATTGGTCCTCAAGGTGCACCGGGTGGCGGATTTGAATACCAAGGTGAATTTACTTCTTCTCCTTCTGGAGCATTAGTTAACTGGTTGTACCGTAATATCAATAACGATCTGTTCTATATGTATGATGGTACTTCTTGGATTCTAGCTACCTCAGACGGTAAGGACTCTCCAGACGGAGCTCCTTGTGGTAATGGCTTACGCTTCTTTACTACTTACCATGATTCAACAACTACTCCTGCTCGTCCTACATTGGATGGTGATACTGGAGGTTGGAACCCTAATGCCCATACGTTTACACCGGGCACTATTAAATGGGTATCACAGAAGATTGCTACTGAACCTGAACTAGGTGCTTGGAACGATCCAATTGATATCACTACTCATGAATACCGTGGACCAGTAGGTTTCCGTGGTTCTCAGTCAATTCTAATTCCTATTCCGGGATGGAACGGTAACTGGGATGACAACATTGCTGCCTCTGCTTGTACAGGTGGTGCTCCTCAGGAATGGGACATCGTTACAATGTATAAGTCGGAAGACCCAGCAGTACAGGAGACTCGTCGTTGGGCCTATAATCCTCAGAATTCTATTTGGGAATGGTTAGTGTACAACTATGTATTCTTAGGTGATGTTCTAGTTGATGGTACGTTGGATGCACAGAAGATTAATGTTAACTCTACGCTTACTGTTGGTACAGGTAACAACGTAGCTAAAGTATCTGGTGAAGATAATATCCGTATTGCGGTAGGTCATGCAGATAAGACCCTAGCTCCGTTCCGAGTTTATCAAGATGGTTCTGTTGTTATCGATAATCCACCAGACAACATTAATAATGATGATCTAGAAGTGATTGAGACATACCGTCAGAATAGTGCACCTACAGGTACAATTGTTACAGGCTCTATTTGGTATGATACTAATGACCAGAATAAGCCTTATCGTTATAACGGTAATGCGTGGCAGGAAGTACGAGATGATGGTGTAATCACTGACGCTAAAGCCAATGGTACTATTTACCCTGATCAAGATAACCTAAGTATTAGTGGTAACTATGTATCAGGTTCTAGTGGATGGGCAATTGATAGGTATGGTAACTCAGAATTCAATAACAGCACCTTCCGTGGTGATGTATATGCAAGCTCTCTGACATTAACAGGTAGCGGGGCACAACTATCCTCAAATGATTATACTTCGGGTTTAGATGGGTGGACGATTAATAGTGATGGGACTGCTGAATTTAATGATGTTACTGTCCGTGGTACGGGTTACTTCACTGATGGTGTATTTGGTGGTACTGTATACGCAGAACATATATCCGGGGATATTGTATCAGGTATTGTAAAGGCTAACCCTACAGCATCAGAGATTAGGCCAGGAGGTGTGGCAGGAACATGGATTGACTTATCTACTGTAGTTAATGTATCTCACACTAGGCCTTATCCTAGACGACTACAACTAACTGCAACTGACGGTTACGATATTATTCAGTTTATGGCAGAAGTAGAAAGAAACGTAGGTTTCATTCTAACATTTGAACTAGTTAGTAGTACTGGTGTCACAGTATGGTCAACTAGTAAAAGCTATAGCTCTATAGGTTCAGGGGATGATAACTTAATTACTGTAGGCTTCCCTAGTATTAATGGATATATACCTGCTAATACTCCAGCAGGTAGTTATAAGTTCAGGGTTAAATCTAACCATGATATCTTTCATGCGTGGTATATGTATCGCTCTTTAGGTACAGCAAGAATAGCCATTGATTCTCAGCTAGTAGCTTATCTATTTAAAGACTCTAGCGAGCTCTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c297d463f963a85a35cfa79616109c64bcdf5b5f010e953f6589eab1832e7aa8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6553
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Vibrio parahaemolyticus phage Chen,Y. and Liu,Y. 2022-07-23 — GenBank