Protein

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UniProt accession
A0A8S5MS66 [UniProt]
Protein name
Endopolygalacturonase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MNDSWNNVKTVCCKPWLVLPTVYSDELSYGEQLDKFCYSLNKIIENNNILPDYISNKIKEYISSGAIGEVVREILGNYILNVKYPPKGITPAIGDGSADDTEALQGCIDYASENGGAVYFPYGSYLTQPLTMKNGVSLFGFDRYSTKIVLKGGATKALLNGNGNNLSVCNLTLDGNSGIQVNDVNVVDMTGSNLMFNGLVIKDGHKLFKFVGDGHLQLDNIVFGNAVENCFSVDGNVIVESSNLLFTALSKVSGVSVVDIKANGGNYDFNSVAKCDTCMLISGNDNNVVAMIGGANNDYVDTGDRNNIEIVGHTKKEYFSGDVKKNANNSETTLQGTRSLHIVGNSTVAIDADSTESVDGSKSEIVTGVTTETYKNQRIVNDKSLNETTEKLNVVVNGETVKNYNGDVTET
Physico‐chemical
properties
protein length:411 AA
molecular weight: 44280,91410 Da
isoelectric point:4,67043
aromaticity:0,07543
hydropathy:-0,22360

Domains

Domains [InterPro]
DC_0607
STR
50–410
DC_0607
IPR012334
STR
91–409
IPR012334
IPR024535
ENZ
92–271
IPR024535
IPR011050
STR
92–405
IPR011050
A0A8S5MS66
1 411
Architecture
STR
STR 50-410 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5MS66
1 411
Domain Start End Length (AA) Confidence
N-terminal 1 97 97 0,9650
Central domain 98 368 272 0,9236
C-terminal 369 411 42 0,3481
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-97
Central
98-368
C-terminal
369-411

Taxonomy

  Name Taxonomy ID Lineage
Phage Podoviridae sp. ctV3c15
[NCBI] 		2826559 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD85018.1 [NCBI]
Genbank nucleotide accession
BK014971 [NCBI]
CDS location
range 11142 -> 12373
strand +
CDS
ATGAACGATTCTTGGAATAATGTAAAAACAGTTTGTTGTAAACCTTGGTTGGTGTTGCCTACTGTTTACAGTGACGAATTAAGCTATGGAGAACAGTTAGATAAGTTTTGTTATTCTCTTAATAAGATTATTGAAAACAATAATATTTTACCAGATTACATTAGCAACAAGATTAAGGAATATATCTCAAGCGGTGCTATTGGCGAAGTAGTTAGAGAAATTTTGGGTAATTATATTTTGAATGTTAAATATCCACCTAAAGGTATTACACCTGCTATTGGAGATGGCAGTGCAGATGACACAGAAGCGTTACAGGGATGCATTGATTATGCAAGTGAGAATGGCGGTGCAGTTTATTTTCCATATGGTAGTTATTTAACACAGCCTTTAACAATGAAGAATGGAGTTAGTTTGTTTGGCTTCGATAGATATTCTACTAAAATCGTGTTAAAGGGTGGGGCTACTAAAGCGTTGCTTAACGGAAATGGTAACAATCTTTCTGTTTGCAATCTTACGCTTGACGGTAACAGTGGTATACAGGTTAATGATGTAAATGTTGTTGATATGACAGGCAGTAACTTAATGTTTAATGGCTTGGTTATTAAAGACGGGCATAAACTCTTTAAATTTGTTGGTGACGGGCATTTACAGTTAGATAACATCGTGTTTGGAAATGCCGTTGAAAATTGCTTTAGCGTTGATGGAAATGTAATTGTAGAGTCTAGTAATTTACTGTTTACGGCACTTAGCAAGGTTAGCGGTGTTAGCGTTGTTGACATTAAGGCTAATGGCGGTAACTATGATTTTAACAGCGTAGCTAAGTGCGATACTTGTATGCTGATTAGTGGTAATGATAATAATGTTGTTGCTATGATTGGCGGTGCGAATAACGATTATGTTGATACCGGAGATCGTAATAATATTGAGATTGTAGGTCATACCAAAAAGGAATATTTTTCTGGAGATGTAAAAAAGAATGCTAATAATTCAGAAACCACTTTACAGGGAACTAGAAGTTTGCATATTGTTGGAAATAGCACAGTTGCTATTGATGCAGATAGCACAGAAAGTGTTGACGGAAGTAAAAGTGAAATTGTAACAGGCGTTACTACTGAAACATATAAAAATCAGAGAATTGTAAACGATAAATCATTAAATGAAACAACTGAAAAGTTAAATGTTGTAGTTAATGGAGAAACAGTAAAAAATTACAATGGTGATGTAACTGAAAC

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
578391e06d5688bf3b82896f07955c24384601b4e9ae5c5c5d6d4a64027e4f1d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8866
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50