Protein

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Genbank accession
WPK20394.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,69
Protein sequence
MLKHQDGFDHYADIGKKGSVVEPYLKAAGYDIRNATDDTFQIDLGRRDGAKSLKFTVERNSSTNASLSWGFTPAGNYACFGFAMKANGSRMRVCRVENLVDVEWNSEDGKLEIDGQKGVNPLILNAWYFFEIELDKSAKKVTVWVNNEKQIEATLTTSWPEKLVLVWGQVGTAPNAGIQYLDDFYAMDDSGSVNTSRLGPIEVATRAPTSDVTTEWEIVNGTNENHYQVASQLEPGRPNAPYLQSNKSGAKDIFRSNTILPTNNKVFGVSVIAYARKGDLDDRKLGMVIQTDGGSEKEVQVPLTEDYKYYQVTHEQTPGNTDWNKGAVEALQFGIVTR
Physico‐chemical
properties
protein length:338 AA
molecular weight: 37528,37690 Da
isoelectric point:5,12906
aromaticity:0,09763
hydropathy:-0,52101

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK20394.1
1 338
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,0650
Central domain 146 327 183 0,1393
C-terminal 328 338 10 0,9827
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-327
C-terminal
328-338

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SD-13_S19
[NCBI] 		3096169 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK20394.1 [NCBI]
Genbank nucleotide accession
OR699186 [NCBI]
CDS location
range 21217 -> 22233
strand -
CDS
ATGTTAAAACATCAAGACGGTTTCGACCACTACGCAGATATCGGCAAGAAAGGTTCCGTAGTCGAGCCGTACTTAAAAGCAGCCGGGTATGATATCCGAAATGCTACTGACGATACGTTCCAGATTGACCTAGGTCGTCGTGATGGCGCTAAGAGCCTCAAATTTACCGTAGAACGTAACTCCTCAACCAATGCGTCGCTATCATGGGGGTTCACTCCGGCCGGAAACTACGCGTGTTTCGGTTTCGCGATGAAAGCCAATGGTTCTCGTATGCGAGTTTGTCGGGTTGAGAACTTGGTCGACGTGGAGTGGAATAGCGAAGACGGTAAGCTAGAAATTGATGGCCAAAAAGGGGTAAACCCGCTGATCCTTAATGCGTGGTATTTTTTCGAGATAGAACTTGATAAGTCCGCTAAGAAAGTAACCGTGTGGGTTAATAACGAAAAGCAAATCGAGGCGACCCTTACTACTTCTTGGCCTGAAAAACTCGTTCTGGTATGGGGGCAAGTGGGTACAGCGCCCAATGCGGGTATCCAGTACCTAGATGACTTTTACGCTATGGACGATTCGGGGTCGGTAAACACTTCCCGCCTAGGGCCGATTGAGGTTGCTACCCGCGCTCCTACTTCTGATGTTACGACCGAATGGGAGATCGTTAATGGTACGAACGAAAATCACTACCAAGTTGCCTCCCAACTGGAGCCGGGGAGACCTAACGCACCGTATTTACAGTCTAACAAGTCTGGAGCTAAAGACATTTTCCGTTCTAATACGATACTCCCGACTAACAATAAGGTTTTCGGCGTGTCGGTGATTGCGTATGCCCGTAAAGGGGACTTAGACGACCGCAAACTCGGTATGGTGATCCAGACGGACGGGGGTTCTGAGAAAGAAGTCCAAGTGCCTTTGACCGAAGACTATAAATATTACCAAGTTACCCACGAACAAACTCCGGGTAATACCGACTGGAATAAAGGCGCTGTCGAAGCATTGCAGTTCGGCATCGTGACTCGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4092cc68cd18c6433f620f91252133f6f1d9162aadd74741b65d83d6ba90d1c2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8939
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence a group of lytic Salmonella phages Dlamini,S.B., Montso,P.K., Ateba,C.N., Mnisi,M.C. and Mlambo,V. 2023-09 — GenBank